PPDB

The Plant Proteome Database

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AT4G27490.1   3'-5'-exoribonuclease family protein

Lab Annot.
Mapman: 29.1 protein.aa activation
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G27490.3 11Arabidopsis thaliana02561001000 (0)_
AT4G27490.4 11Arabidopsis thaliana02561001000 (0)_
AT4G27490.7 11Arabidopsis thaliana7E-154211991000 (0)S
Os03g62720.1 7Oryza sativa1E-12022770850 (0)_
Os08g02360.1 7Oryza sativa1E-11922770840 (0)_
Os03g62720.2 7Oryza sativa9E-11022766800 (0)C
GRMZM2G158789_P01 3.21Zea mays7E-12122471850 (0)_
v1_GRMZM2G158789_P01 4a53Zea mays7E-12122471852 (2)_
Zm00001eb328370_P002 agpv5Zea mays7E-12122471850 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RNase_PH(1) RNase_PH_C(1)
TargetP: Cytoplasm (Class 5 C0.420; M0.225; S0.013; _0.433)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 256 aa (-cTP 175)
Molecular Weight 27.45 kDA(-cTP )
PI 4.90(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help