PPDB

PPDB	The Plant Proteome Database

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AT4G27390.1 transmembrane protein

Lab Annot.

unknown protein
Mapman: 35.2 not assigned.unknown

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
Os05g42280.1 7 Oryza sativa 2E-50 143 56 72 1 (1) C
Os05g42280.2 7 Oryza sativa 2E-38 139 48 61 0 (0) C
GRMZM2G082894_P01 3.21 Zea mays 1E-47 150 50 70 0 (0) C
Zm00001eb352790_P001 agpv5 Zea mays 1E-47 150 50 70 0 (0) C
v1_GRMZM2G082894_P01 4a53 Zea mays 1E-47 150 50 70 0 (0) C

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF2614(1) FYVE(2) Prok-RING_1(2) TF_Zn_Ribbon(1) YjdM_Zn_Ribbon(1) zf-LITAF-lik
TargetP:	Chloroplast (Class 3 C0.792; M0.062; S0.014; _0.312)
Predotar:
Subcel. Location:	Transmembrane
TM-HMM prediction:	2 TMs
Aramemnon:	2 TMs
TAT position:	76
Length	235 aa (-cTP 190) (-lTP 131)
Molecular Weight	25.93 kDA(-cTP 20.85)(-lTP 14.37)
PI	9.23(-cTP 8.34)(-lTP 4.560)

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
2320	Detail								[A. thaliana]	Thylakoids plastoglobule
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data