PPDB

The Plant Proteome Database

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AT4G27390.1   transmembrane protein

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os05g42280.1 7Oryza sativa2E-5014356721 (1)C
Os05g42280.2 7Oryza sativa2E-3813948610 (0)C
GRMZM2G082894_P01 3.21Zea mays1E-4715050700 (0)C
Zm00001eb352790_P001 agpv5Zea mays1E-4715050700 (0)C
v1_GRMZM2G082894_P01 4a53Zea mays1E-4715050700 (0)C

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF2614(1) FYVE(2) Prok-RING_1(2) TF_Zn_Ribbon(1) YjdM_Zn_Ribbon(1) zf-LITAF-lik
TargetP: Chloroplast (Class 3 C0.792; M0.062; S0.014; _0.312)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 2 TMs
Aramemnon: 2 TMs
TAT position: 76
Length 235 aa (-cTP 190) (-lTP 131)
Molecular Weight 25.93 kDA(-cTP 20.85)(-lTP 14.37)
PI 9.23(-cTP 8.34)(-lTP 4.560)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


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