PPDB

 The Plant Proteome Database

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AT4G27070.1   tryptophan synthase beta-subunit 2
Lab Annot. tryptophan synthase, beta subunit 2 (TSB2)
Mapman: 13.1.6.5.5 amino acid metabolism.synthesis.aromatic aa.tryptophan.tryptophan synthase
Curated Location
TAIR curated location: chloroplast1840915
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G54810.1 11Arabidopsis thaliana04788993367 (186)C
AT5G28237.1 11Arabidopsis thaliana040364798 (2)M
AT5G28237.2 11Arabidopsis thaliana5E-16535862780 (0)M
Os08g04180.1 7Oryza sativa0399879521 (21)C
Os06g42560.1 7Oryza sativa2E-2938030434 (4)C
Os06g42560.3 7Oryza sativa2E-2938030434 (4)C
Zm00001eb416990_P001 agpv5Zea mays039888950 (0)C
v1_GRMZM2G005024_P01 4a53Zea mays0398889529 (29)C
v1_GRMZM2G169593_P02 4a53Zea mays0398889522 (22)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Cas_APE2256(1) PALP(1)
TargetP: Chloroplast (Class 1 C0.963; M0.114; S0.006; _0.039)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 475 aa (-cTP 425)
Molecular Weight 51.60 kDA(-cTP 46.42)
PI 6.20(-cTP 5.76)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
310Detail       leaf [A. thaliana] total leaf tissue clpr2-1:R2-TAPlong
311Detail       leaf [A. thaliana] total leaf tissue clpr2-1:R2-his6
339Detail       leaf [A. thaliana] chloroplast stromawild-type
351Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
541Detail       leaf [A. thaliana] stroma (FPLC) >1 MDa stromawild-type
1127Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1292Detail       leaf [A. thaliana] co-IP cGEP (rep. 1) stromawild-type
1293Detail       leaf [A. thaliana] co-IP preserum cGEP (rep. 2) stromawild-type
1294Detail       leaf [A. thaliana] co-IP cGEP (rep. 2) stromawild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1870Detail       Total leaf [A. thaliana] Stroma wild-type
1986Detail       leaf [A. thaliana] plastid Prep1_Prep2
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2028Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2115Detail       leaf [A. thaliana] Stroma stromacGep
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2218Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2248Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19888209(80S polysomal fraction)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21841088(mitochondria (2DE native gel))
21173025(root proteome)

Comparative Proteomics Data

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