PPDB

 The Plant Proteome Database

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AT4G27000.1   RNA-binding (RRM/RBD/RNP motifs) family protein
Lab Annot. RNA-binding (RRM/RBD/RNP motifs) protein
Mapman: 27.3.99 RNA.regulation of transcription.unclassified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G54900.1 11Arabidopsis thaliana039471798 (3)M
AT1G11650.2 11Arabidopsis thaliana6E-1463516274120 (51)_
AT1G11650.1 11Arabidopsis thaliana2E-1202826276100 (48)_
Os03g37270.2 6Oryza sativa8E-152331667711 (11)_
Os03g37270.1 7Oryza sativa9E-152331667722 (22)_
Os08g09100.1 7Oryza sativa1E-130330637414 (14)_
Zm00001eb219820_P001 agpv5Zea mays3E-14133165760 (0)M
GRMZM2G002874_P01 3.21Zea mays3E-141331657627 (26)M
Zm00001eb219820_P002 agpv5Zea mays1E-13932565760 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Nup35_RRM_2(1) RRM_1(3) RRM_3(2) RRM_5(3) RRM_7(2) RRM_occluded(2)
TargetP: Cytoplasm (Class 4 C0.192; M0.334; S0.032; _0.569)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 415 aa (-cTP 354)
Molecular Weight 44.97 kDA(-cTP )
PI 5.62(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2246Detail       seedlings [A. thaliana] total tissue gfs9
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2270Detail       seedlings [A. thaliana] total tissue wild-type
2287Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

 19200160(flower-stage 12)
19546170(mature pollen grains)
17216043(leaf)
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data

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