PPDB

 The Plant Proteome Database

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AT4G26160.1   atypical CYS HIS rich thioredoxin 1
Lab Annot. atypical Cys His-rich thioredoxin 1 (ACHT1)
Mapman: 21.1 redox.thioredoxin
Curated Location plastid stroma (Pubmed: 23198870 19109414 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G29670.1 11Arabidopsis thaliana3E-741417185212 (157)C
AT4G29670.2 11Arabidopsis thaliana4E-681277486155 (103)C
AT2G33270.1 11Arabidopsis thaliana1E-4616743651 (1)C
Os05g11090.1 7Oryza sativa3E-76146698316 (16)C
Os05g11090.2 7Oryza sativa1E-64127708214 (14)_
Os03g21000.1 7Oryza sativa5E-4413348730 (0)C
GRMZM2G024073_P01 3.21Zea mays2E-71129728624 (22)C
Zm00001eb284120_P001 agpv5Zea mays2E-7112972860 (0)C
v1_GRMZM2G024073_P01 4a53Zea mays2E-71129728617 (17)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AhpC-TSA(1) LOH1CR12(1) OST3_OST6(1) Phosducin(1) Redoxin(1) Thioredoxin(1) Thio
TargetP: Chloroplast (Class 1 C0.878; M0.044; S0.005; _0.049)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 221 aa (-cTP 148) (-lTP 143)
Molecular Weight 24.35 kDA(-cTP 16.65)(-lTP 16.17)
PI 8.72(-cTP 6.98)(-lTP 7.033)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
420Detail       leaf [A. thaliana] chloroplast stromaclpR1-stop (EMS)
1481Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2057Detail       Total leaf [A. thaliana] chloroplast stromawt and cgep
2065Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2068Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2069Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2072Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2073Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2082Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2085Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2

* For details about the exprimental sources click here.

Published Proteomics Data

 19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help