PPDB

PPDB	The Plant Proteome Database

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AT4G25240.1 SKU5 similar 1

Lab Annot.

SKS1 (SKU5 SIMILAR 1); copper ion binding
Mapman: 26.7 misc.oxidases - copper, flavone etc.

Curated Location

plasma membrane

TAIR curated location: anchored to plasma membrane & anchored to membrane12068095,12805588

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G25240.2 11 Arabidopsis thaliana 0 589 100 100 0 (0) S
AT5G51480.1 11 Arabidopsis thaliana 0 577 81 90 0 (0) S
AT4G12420.1 11 Arabidopsis thaliana 0 562 66 79 313 (251) S
Os06g01490.1 7 Oryza sativa 0 542 64 79 22 (22) S
Os01g01030.1 7 Oryza sativa 0 579 59 77 0 (0) M
Os08g05820.1 7 Oryza sativa 0 569 60 75 0 (0) S
v1_GRMZM2G438386_P01 4a53 Zea mays 0 554 63 77 10 (10) S
GRMZM2G438386_P01 3.21 Zea mays 0 554 63 77 17 (17) S
Zm00001eb043960_P001 agpv5 Zea mays 0 554 63 77 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Cu-oxidase(2) Cu-oxidase_2(1) Cu-oxidase_3(4) Ntox30(1)
TargetP:	Secreted (Class 1 C0.006; M0.027; S0.989; _0.022)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	589 aa (-cTP 519)
Molecular Weight	65.88 kDA(-cTP )
PI	6.89(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

12805588(GBI-anchored-callus)
14517339(GPI anchored suspension cells)
16602701(GPI-anchored Plasma membrane suspension cells)
16618929(PlasmaMembrane-LOPIT-callus)
17317660(Plasma Membrane proteome)
17644812(plasma membrane - suspension cells)
17660356(tonoplast (Brassica oleracea buds))
19036721(sterol dependent detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
WallDB-E.Jamet(cell wall reference proteome)
21533090(plasmodesmata-crude)
20843791(DRM-enriched plasmamembrane)
21173025(root proteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data