PPDB

PPDB	The Plant Proteome Database

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AT4G25210.1 DNA-binding storekeeper protein-related transcriptional regulator

Lab Annot.

transcription regulator (perhaps plastid)
Mapman: 27.3.49 RNA.regulation of transcription.GeBP like

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G00130.1 11 Arabidopsis thaliana 2E-69 190 63 73 0 (0) M
AT4G01260.1 11 Arabidopsis thaliana 2E-50 363 38 53 0 (0) C
AT1G61730.1 11 Arabidopsis thaliana 3E-32 337 34 48 0 (0) _
Os03g25430.1 7 Oryza sativa 1E-12 104 34 57 0 (0) S
Os07g44200.1 7 Oryza sativa 2E-12 104 34 54 0 (0) _
GRMZM2G082318_P01 3.21 Zea mays 1E-15 104 37 58 0 (0) _
Zm00001eb328650_P001 agpv5 Zea mays 1E-15 104 37 58 0 (0) _
v1_GRMZM2G082318_P01 4a53 Zea mays 1E-15 104 37 58 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF573(2) MADF_DNA_bdg(2) Myb_DNA-bind_4(2) SNRNP27(2) TIP120(1)
TargetP:	Cytoplasm (Class 4 C0.431; M0.056; S0.043; _0.765)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	368 aa (-cTP 352)
Molecular Weight	40.27 kDA(-cTP )
PI	6.09(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
640	Detail								leaf [A. thaliana]	plastid nucleoid	wild-type
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1618	Detail								[A. thaliana]		m48
1622	Detail								[A. thaliana]		m48

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
15496452(nucleolus)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data