PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G24920.1   secE/sec61-gamma protein transport protein
Lab Annot. secE/sec61-gamma protein transport protein
Mapman: 29.3.4.99 protein.targeting.secretory pathway.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G50460.1 11Arabidopsis thaliana2E-436910010017 (14)_
AT3G48570.1 11Arabidopsis thaliana5E-406986978 (4)_
Os02g08180.1 7Oryza sativa9E-416892988 (8)_
Os06g44374.1 7Oryza sativa1E-4068921008 (8)_
Os03g31340.1 7Oryza sativa9E-163686910 (0)_
AC208023.3_FGP001 3.21Zea mays2E-4168959838 (38)_
GRMZM2G089491_P01 3.21Zea mays3E-4168949825 (25)_
Zm00001eb274950_P001 agpv5Zea mays3E-416894980 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: SecE(1)
TargetP: Cytoplasm (Class 1 C0.039; M0.063; S0.134; _0.970)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 69 aa (-cTP 30)
Molecular Weight 7.74 kDA(-cTP )
PI 9.74(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1566Detail       leaf [A. thaliana] TiO2 thylakoid membranek2k3
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help