PPDB

PPDB	The Plant Proteome Database

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AT4G24490.1 RAB geranylgeranyl transferase alpha subunit 1

Lab Annot.

protein binding / protein prenyltransferase
Mapman: 16.1.1 secondary metabolism.isoprenoids.non-mevalonate pathway

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G24490.2 11 Arabidopsis thaliana 0 678 100 100 5 (2) _
AT5G41820.1 11 Arabidopsis thaliana 0 707 67 76 0 (0) _
AT5G41820.2 11 Arabidopsis thaliana 0 707 67 76 0 (0) _
Os06g46380.1 7 Oryza sativa 6E-157 709 44 61 0 (0) _
Os09g33930.5 7 Oryza sativa 2E-19 183 28 51 0 (0) _
Os09g33930.1 7 Oryza sativa 3E-19 183 28 51 0 (0) _
Zm00001eb224710_P001 agpv5 Zea mays 0 699 45 62 0 (0) _
v1_GRMZM2G126161_P02 4a53 Zea mays 6E-180 699 45 61 0 (0) _
GRMZM2G126161_P01 3.21 Zea mays 6E-180 699 45 61 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Amdase(1) LRR_1(4) LRR_4(5) LRR_6(4) LRR_8(3) LRR_9(1) MetW(1) PPTA(6)
TargetP:	Cytoplasm (Class 5 C0.155; M0.379; S0.063; _0.451)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	678 aa (-cTP 661)
Molecular Weight	76.91 kDA(-cTP )
PI	5.59(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
2248	Detail								seedlings [A. thaliana]	total tissue	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

16358359(cell suspension (M&Skoog))
16502469(cell suspension-CD-down)
19546170(mature pollen grains)
19888209(leaves)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data