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PPDB	The Plant Proteome Database

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AT4G24270.1 EMBRYO DEFECTIVE 140

Lab Annot.

RNA recognition motif (RRM)-containing protein
Mapman: 27.4 RNA.RNA binding

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G24270.2 11 Arabidopsis thaliana 0 817 99 99 8 (1) _
AT4G24270.4 11 Arabidopsis thaliana 0 692 100 100 0 (0) _
AT4G24270.3 11 Arabidopsis thaliana 0 692 100 100 0 (0) _
Os08g02130.2 7 Oryza sativa 0 823 47 62 7 (7) _
Os08g02130.1 7 Oryza sativa 0 823 47 62 7 (7) _
Os12g38380.1 7 Oryza sativa 1E-08 475 20 40 0 (0) _
GRMZM2G065532_P01 3.21 Zea mays 0 797 46 64 11 (11) _
Zm00001eb260720_P005 agpv5 Zea mays 0 797 46 64 0 (0) _
v1_GRMZM2G065532_P01 4a53 Zea mays 0 797 46 64 10 (10) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	BORG_CEP(3) DUF4806(2) Lsm_interact(1) NRDE-2(3) RRM_1(1) Suf(4) TPR_14(5) TPR_1
TargetP:	Cytoplasm (Class 1 C0.040; M0.128; S0.088; _0.951)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	816 aa (-cTP 790)
Molecular Weight	92.77 kDA(-cTP )
PI	5.53(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
19376835(leaf phosphoproteins)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data