PPDB

The Plant Proteome Database

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AT4G24130.1   DUF538 family protein (Protein of unknown function%2C DUF538)

Lab Annot. unknown function, DUF538
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G46230.1 11Arabidopsis thaliana3E-3613441621 (1)_
AT1G56580.1 11Arabidopsis thaliana3E-33131446438 (21)_
AT1G09310.1 11Arabidopsis thaliana2E-321344463248 (122)_
Os01g11240.1 7Oryza sativa9E-3914240665 (5)_
Os11g38220.1 7Oryza sativa5E-3614143630 (0)_
Os10g37400.1 7Oryza sativa5E-369856770 (0)M
Zm00001eb043450_P001 agpv5Zea mays7E-6013661770 (0)_
v1_GRMZM2G093405_P01 4a53Zea mays8E-3814042623 (3)_
v1_GRMZM2G093405_P02 4a53Zea mays8E-3814042623 (3)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF538(1) tRNA_bind(2)
TargetP: Cytoplasm (Class 2 C0.177; M0.053; S0.160; _0.882)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 157 aa (-cTP 148)
Molecular Weight 17.95 kDA(-cTP )
PI 5.62(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
2399Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1WTSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

14617066(Nuclear proteome)
19200160(flower-stage 12)
20118269(developing seeds)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help