PPDB

 The Plant Proteome Database

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AT4G23940.1   FtsH extracellular protease family
Lab Annot. FTSHi1, inactive FTSH (formerly ARC1)
Mapman: 29.5.7.2.4* protein.degradation.metalloprotease.MA(M).M41
Curated Location envelope-inner (Pubmed: 23198870 12185496 22900897 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G30950.4 11Arabidopsis thaliana9E-10450540580 (0)C
AT2G30950.2 11Arabidopsis thaliana1E-10350540580 (0)C
AT2G30950.3 11Arabidopsis thaliana1E-10350540580 (0)C
Os06g45820.1 7Oryza sativa1E-984953858127 (127)C
Os06g51029.1 7Oryza sativa3E-934873958128 (128)C
Os06g51029.2 7Oryza sativa6E-91389436263 (63)C
Zm00001eb274190_P003 agpv5Zea mays1E-9949638580 (0)C
GRMZM2G087598_P01 3.21Zea mays3E-994963858332 (323)C
GRMZM2G087598_P02 3.21Zea mays3E-994963858332 (323)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AAA(1) AAA_14(1) AAA_16(2) AAA_17(1) AAA_18(1) AAA_2(1) AAA_22(2) AAA_28(1) AAA_
TargetP: Chloroplast (Class 1 C0.984; M0.030; S0.004; _0.107)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 3 TMs
Aramemnon: 3 TMs
TAT position:
Length 946 aa (-cTP 893)
Molecular Weight 105.54 kDA(-cTP 99.51)
PI 7.64(-cTP 6.23)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1535Detail       leaf [A. thaliana] wild-type
1641Detail       leaf [A. thaliana] total tissue shoot1 mutant
1708Detail        [A. thaliana] Wild-type
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1936Detail       leaf [A. thaliana] chloroplast Prep1_Prep2
1983Detail       leaf [A. thaliana] plastid wild-type
1984Detail       leaf [A. thaliana] plastid wild-type
1985Detail       leaf [A. thaliana] plastid wild-type
1986Detail       leaf [A. thaliana] plastid Prep1_Prep2
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2251Detail       seedlings [A. thaliana] total tissue wild-type
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 16618929(MITO/PLASTID-LOPIT-callus)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help