PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G23820.1   Pectin lyase-like superfamily protein
Lab Annot. Pectin lyase-like
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G41870.1 11Arabidopsis thaliana042869812 (0)S
AT3G62110.1 11Arabidopsis thaliana1E-151434516885 (41)S
AT3G62110.2 11Arabidopsis thaliana1E-15143451680 (0)S
Os02g15690.1 7Oryza sativa041566801 (1)S
Os05g50960.1 7Oryza sativa041865800 (0)S
Os01g43160.1 7Oryza sativa042263800 (0)S
GRMZM2G052844_P02 3.21Zea mays041963782 (2)S
v1_GRMZM2G052844_P02 4a53Zea mays041963782 (2)S
v1_GRMZM2G052844_P01 4a53Zea mays041963782 (2)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Glyco_hydro_28(1) Pectate_lyase_3(2)
TargetP: Secreted (Class 1 C0.040; M0.025; S0.986; _0.034)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 444 aa (-cTP 427)
Molecular Weight 48.63 kDA(-cTP )
PI 8.76(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
311Detail       leaf [A. thaliana] total leaf tissue clpr2-1:R2-his6
324Detail       leaf [A. thaliana] cell wall enriched wild-type
1113Detail        [A. thaliana] control for RARE-1 co-IP wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help