PPDB

 The Plant Proteome Database

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AT4G23650.1   calcium-dependent protein kinase 6
Lab Annot. calcium-dependent protein kinase (CDPK) - cytosol & nucleus
Mapman: 30.3 signalling.calcium; 30.1.1 signalling.in sugar and nutrient physiology
Curated Location cytosol (Pubmed: 12913141 )
nucleus (Pubmed: 12913141 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G12180.1 11Arabidopsis thaliana052265810 (0)_
AT5G19360.1 11Arabidopsis thaliana046572860 (0)_
AT1G50700.1 11Arabidopsis thaliana045668835 (1)_
Os01g43410.1 7Oryza sativa0466809319 (19)_
Os05g50810.1 7Oryza sativa046679920 (0)C
Os05g50810.2 7Oryza sativa044079920 (0)C
GRMZM2G025387_P02 3.21Zea mays0466809218 (18)M
GRMZM2G025387_P01 3.21Zea mays0466809218 (18)M
Zm00001eb358560_P001 agpv5Zea mays046680920 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: APH(2) Caleosin(1) Dockerin_1(2) EF-hand_1(4) EF-hand_4(2) EF-hand_5(4) EF-hand_
TargetP: Chloroplast (Class 1 C0.949; M0.083; S0.008; _0.091)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 529 aa (-cTP 454)
Molecular Weight 59.34 kDA(-cTP 51.79)
PI 5.95(-cTP 5.35)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1546Detail       leaf [A. thaliana] TiO2 thylakoid membranek1xk3
1569Detail       leaf [A. thaliana] TiO2 thylakoid membranek1k3
1572Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1581Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1582Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1583Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2287Detail        [A. thaliana] Clp C1 WT
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2302Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP
2317Detail       leaf [A. thaliana] PG plastoglobule 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 15539469(vacuole)
16618929(PlasmaMembrane-LOPIT-callus)
17317660(Plasma Membrane proteome)
19200160(flower-stage 12)
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
17216043(leaf)
19334764(plasma membrane (cell culture))
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
21533090(plasmodesmata-crude)
21325567(root-proteome (wt & det3))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20843791(DRM-enriched plasmamembrane)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

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