PPDB

The Plant Proteome Database

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AT4G23630.1   VIRB2-interacting protein 1

Lab Annot. BTI1 (VIRB2-INTERACTING PROTEIN 1), RTLNB1 - cytosol & ER
Mapman: 35.1 not assigned.no ontology
Curated Location cytosol (Pubmed: 15494553 20424177 )
ER (Pubmed: 15494553 20424177 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G23630.2 11Arabidopsis thaliana02751001000 (0)_
AT4G11220.1 11Arabidopsis thaliana1E-150275828956 (50)_
AT5G41600.1 11Arabidopsis thaliana5E-11427966750 (0)_
Os05g45050.1 7Oryza sativa5E-115270627715 (15)_
Os01g53520.1 7Oryza sativa6E-10625265809 (9)_
Os01g12650.1 7Oryza sativa5E-105264587640 (40)_
GRMZM2G031308_P02 3.21Zea mays5E-117250698214 (14)_
GRMZM2G031308_P01 3.21Zea mays5E-117250698214 (14)_
Zm00001eb153940_P001 agpv5Zea mays5E-11725069820 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: BRI3BP(2) Reticulon(1)
TargetP: Cytoplasm (Class 3 C0.317; M0.061; S0.059; _0.830)
Predotar:
Subcel. Location:
TM-HMM prediction: 3 TMs
Aramemnon: 4 TMs
TAT position:
Length 275 aa (-cTP 212)
Molecular Weight 30.53 kDA(-cTP )
PI 8.32(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1398Detail       leaf [A. thaliana] total leaf tissue 1.14 Prep1_Prep2
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1420Detail        [A. thaliana]  
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1427Detail        [A. thaliana] total leaf tissue 1.11 wild-type
1428Detail        [A. thaliana] total leaf tissue 1.11 Prep1_Prep2_t1_t2
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1612Detail       Natural Senescence leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1744Detail        [A. thaliana] Mep-6
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2268Detail       seedlings [A. thaliana] total tissue wild-type
2269Detail       seedlings [A. thaliana] total tissue wild-type
2270Detail       seedlings [A. thaliana] total tissue wild-type
2271Detail       seedlings [A. thaliana] total tissue wild-type
2320Detail        [A. thaliana] Thylakoids plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

15060130(Plasma Membrane proteome)
15539469(vacuole)
16618929(UNKNOWN-LOPIT-callus)
17317660(Plasma Membrane proteome)
17660356(tonoplast (Brassica oleracea buds))
19200160(flower-stage 12)
17216043(leaf)
19253305(phosphoproteins (etiolated seedling))
19334764(plasma membrane (cell culture))
19376835(leaf phosphoproteins)
20166762(whole leaf)
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
21311031(lysine-acetylated leaf)
21325567(root-proteome (wt & det3))
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)
21988472(vacuole (unfiltered data))
21515685(GreenCut2)

Comparative Proteomics Data


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