PPDB

PPDB	The Plant Proteome Database

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AT4G23500.1 Pectin lyase-like superfamily protein

Lab Annot.

GH28 (polygalacturonases)
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G61490.4 11 Arabidopsis thaliana 0 441 67 82 0 (0) C
AT3G61490.5 11 Arabidopsis thaliana 0 441 67 82 0 (0) S
AT3G61490.1 11 Arabidopsis thaliana 0 441 67 82 0 (0) S
Os03g03350.1 7 Oryza sativa 0 426 60 74 0 (0) S
Os07g14160.1 7 Oryza sativa 6E-162 406 57 72 0 (0) S
Os03g61800.1 7 Oryza sativa 4E-149 398 54 71 0 (0) S
Zm00001eb001830_P001 agpv5 Zea mays 0 432 58 76 0 (0) M
GRMZM2G119494_P01 3.21 Zea mays 0 432 58 76 3 (3) M
v1_GRMZM2G119494_P01 4a53 Zea mays 0 432 58 76 3 (3) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(2) Glyco_hydro_28(1) Pectate_lyase_3(2)
TargetP:	Secreted (Class 1 C0.010; M0.032; S0.948; _0.093)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	495 aa (-cTP 433)
Molecular Weight	54.69 kDA(-cTP )
PI	5.53(-cTP )

Experimental Evidence

Expand

* For details about the exprimental sources click here.

Published Proteomics Data

15593128(Cell Wall proteome)
WallDB-E.Jamet(cell wall reference proteome)
21413152(Xylem-sap (BrassicaOleracea))

Comparative Proteomics Data