PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G22720.1   Actin-like ATPase superfamily protein

Lab Annot. O-sialoglycoprotein endopeptidase
Mapman: 29.5.7.9.1* protein.degradation.metalloprotease.MK.M22
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G22720.2 11Arabidopsis thaliana035310010014 (8)_
AT2G45270.1 11Arabidopsis thaliana5E-2535226452 (0)C
Os05g10630.1 7Oryza sativa034781904 (4)_
Os12g29990.1 7Oryza sativa1E-2533727460 (0)C
Os12g29990.4 7Oryza sativa7E-2427928480 (0)_
GRMZM2G141776_P02 3.21Zea mays034281900 (0)C
GRMZM2G141776_P01 3.21Zea mays034281900 (0)C
Zm00001eb283430_P001 agpv5Zea mays034281900 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Carbam_trans_N(2) TsaD(1)
TargetP: Cytoplasm (Class 3 C0.092; M0.044; S0.211; _0.717)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 353 aa (-cTP 291)
Molecular Weight 38.77 kDA(-cTP )
PI 5.62(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2286Detail        [A. thaliana] Clp C1 WT
2288Detail        [A. thaliana] Clp C1 WT
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2298Detail        [A. thaliana] Clp C1 WT
2300Detail        [A. thaliana] Clp C1 TRAP
2302Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help