PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT4G22090.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G22080.1 11 Arabidopsis thaliana 0 394 92 94 0 (0) S
AT1G11920.1 11 Arabidopsis thaliana 0 392 69 79 0 (0) S
AT1G30350.1 11 Arabidopsis thaliana 9E-159 382 59 71 0 (0) S
Os04g05050.2 7 Oryza sativa 1E-142 350 56 72 0 (0) _
Os04g05050.1 7 Oryza sativa 1E-141 350 56 72 0 (0) S
Os10g31910.1 7 Oryza sativa 3E-132 349 55 68 0 (0) S
v1_GRMZM2G412207_P02 4a53 Zea mays 4E-144 350 57 72 0 (0) _
v1_GRMZM2G131912_P01 4a53 Zea mays 7E-143 350 56 72 0 (0) S
Zm00001eb088830_P002 agpv5 Zea mays 7E-143 350 56 72 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(1) NosD(2) Pectate_lyase_4(2)
TargetP:	Secreted (Class 1 C0.005; M0.060; S0.986; _0.023)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	394 aa (-cTP 373)
Molecular Weight	43.30 kDA(-cTP )
PI	8.55(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data