PPDB

The Plant Proteome Database

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AT4G21660.1   proline-rich spliceosome-associated (PSP) family protein

Lab Annot. proline-rich spliceosome-associated (PSP) protein
Mapman: 27.1.1 RNA.processing.splicing
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G21660.2 11Arabidopsis thaliana059897973 (3)C
AT4G21660.3 11Arabidopsis thaliana0372991000 (0)C
AT1G11520.1 11Arabidopsis thaliana7E-54114848936 (36)S
Os02g58090.1 7Oryza sativa050372845 (5)C
Os02g58090.2 7Oryza sativa4E-4612962750 (0)C
Zm00001eb229010_P003 agpv5Zea mays055370820 (0)C
v1_GRMZM2G132060_P01 4a53Zea mays0553708215 (15)C
GRMZM2G132060_P01 3.21Zea mays055370824 (4)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF382(2) GOLD_2(3) PSP(1)
TargetP: Chloroplast (Class 2 C0.947; M0.031; S0.038; _0.166)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 584 aa (-cTP 524)
Molecular Weight 66.83 kDA(-cTP 60.33)
PI 5.11(-cTP 4.92)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
2258Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
20813957(SUMO proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help