PPDB

 The Plant Proteome Database

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AT4G21540.3   sphingosine kinase 1
Lab Annot. sphingosine kinase 1
Mapman: 11.8.1 lipid metabolism.exotics (steroids, squalene etc).sphingolipids
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G21540.1 11Arabidopsis thaliana03811001000 (0)_
AT4G21534.2 11Arabidopsis thaliana037771830 (0)_
AT4G21534.1 11Arabidopsis thaliana037771830 (0)_
Os01g57350.1 7Oryza sativa1E-11629754730 (0)_
Os01g57350.2 7Oryza sativa2E-11629754730 (0)_
Os07g37580.1 7Oryza sativa6E-10329851650 (0)_
Zm00001eb324260_P001 agpv5Zea mays5E-11233953690 (0)_
GRMZM2G057475_P04 3.21Zea mays6E-11233953690 (0)C
Zm00001eb106910_P001 agpv5Zea mays4E-11139447630 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DAGK_cat(1)
TargetP: Cytoplasm (Class 3 C0.321; M0.096; S0.030; _0.729)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 385 aa (-cTP 329)
Molecular Weight 42.67 kDA(-cTP )
PI 7.59(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 15539469(vacuole)
21988472(vacuole (unfiltered data))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help