PPDB

PPDB	The Plant Proteome Database

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AT4G21100.1 damaged DNA binding protein 1B

Lab Annot.

DDB1B (DAMAGED DNA BINDING PROTEIN 1 B)
Mapman: 20.2.5 stress.abiotic.light

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G05420.1 11 Arabidopsis thaliana 0 1088 91 96 92 (76) _
AT4G05420.2 11 Arabidopsis thaliana 0 1088 89 94 80 (67) _
AT3G55200.1 11 Arabidopsis thaliana 2E-65 1239 23 41 85 (34) S
Os05g51480.1 7 Oryza sativa 0 1090 80 91 40 (40) _
Os05g51480.2 7 Oryza sativa 0 999 80 91 39 (39) _
Os02g04480.1 7 Oryza sativa 2E-46 853 24 41 33 (33) _
Zm00001eb297320_P001 agpv5 Zea mays 0 1037 80 91 0 (0) _
v1_GRMZM2G402002_P01 4a53 Zea mays 0 896 81 90 11 (11) _
GRMZM2G430027_P01 3.21 Zea mays 0 673 76 88 42 (42) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CPSF_A(3) MMS1_N(1)
TargetP:	Cytoplasm (Class 4 C0.112; M0.186; S0.139; _0.426)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1088 aa (-cTP 1079)
Molecular Weight	121.18 kDA(-cTP )
PI	5.18(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1350	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 3)
1392	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
2009	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2010	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2015	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2018	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2020	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2289	Detail								[A. thaliana]		Clp C1 TRAP
2297	Detail								[A. thaliana]		Clp C1 WT
2304	Detail								[A. thaliana]		Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

19114538(guard cells Arabidopsis leaf)
WallDB-E.Jamet(cell wall reference proteome)
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data