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AT4G20960.1
Cytidine/deoxycytidylate deaminase family protein
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| Lab Annot. |
cytidine/deoxycytidylate deaminase, Riboflavin biosynthesis protein ribD
Mapman: 23.5.3 nucleotide metabolism.deoxynucleotide metabolism.cytosine deaminase |
| Curated Location |
plastid (Pubmed: 23198870 18431481 ) (supported by in-house exprements)
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| Species |
Arabidopsis thaliana
Source:
TAIR Arabidopsis (v.11) |
| Links |
TAIR PeptideAtlas POGS SUBA Uniprot PTM
Get sequence
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Related Genes
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#Spots: The number of publicly accessible spots are in parenthesis
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| Prediction |
| PFAM: |
dCMP_cyt_deam_1(1) Inv-AAD(2) MafB19-deam(1) |
| TargetP: |
Chloroplast (Class 1 C0.969; M0.066; S0.016; _0.037) |
| Predotar: |
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| Subcel. Location: |
Lumen |
| TM-HMM prediction: |
No |
| Aramemnon: |
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| TAT position: |
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| Length |
426 aa (-cTP 365) (-lTP 364) |
| Molecular Weight |
46.67 kDA(-cTP 39.87)(-lTP 39.80) |
| PI |
6.04(-cTP 5.26)(-lTP 5.273) |
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Experimental Evidence
Expand
View Identified Peptides
View GeneModel
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| Expr* | Spot | MW native | MW denatured | pI native | pI denatured | Type | Mowse | Ambiguity | Tissue | Sample from | Genotype |
| 303 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | wild-type |
| 326 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | wild-type |
| 339 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | wild-type |
| 544 | Detail | | | | | | | | leaf [A. thaliana] | stroma (FPLC) <600 kDa (LMA) | wild-type |
| 621 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | clpr4-1 |
| 622 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | wild-type |
| 869 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | wild-type |
| 870 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | wild-type |
| 871 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | wild-type |
| 873 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | wild-type |
| 874 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | wild-type |
| 1406 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 rep 2. | wild-type |
| 1408 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 rep 2. | clpr2-1 |
| 1418 | Detail | | | | | | | | leaf [A. thaliana] | total tissue (2% sucrose) | clpr4-1 (rep. 3) |
| 1455 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | wild-type (rep. 1) |
| 1465 | Detail | | | | | | | | leaf [A. thaliana] | co-IP GST-ClpS stroma | clpc1 x clps (rep. 1) |
| 1467 | Detail | | | | | | | | leaf [A. thaliana] | co-IP GST-ClpS stroma | clpc1 x clps (rep. 2) |
| 1482 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | clpc1 x clps (rep. 1) |
| 1483 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | wild-type (rep. 2) |
| 1485 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | wild-type (rep. 3) |
| 1486 | Detail | | | | | | | | leaf [A. thaliana] | chloroplast stroma | clpc1 x clps (rep. 3) |
| 1535 | Detail | | | | | | | | leaf [A. thaliana] | | wild-type |
| 1941 | Detail | | | | | | | | leaf [A. thaliana] | stroma WT stroma | wild-type |
| 1942 | Detail | | | | | | | | leaf [A. thaliana] | stroma WT stroma | wild-type |
| 1943 | Detail | | | | | | | | leaf [A. thaliana] | stroma WT stroma | wild-type |
| 1944 | Detail | | | | | | | | leaf [A. thaliana] | stroma UVR stroma | UVR |
| 1947 | Detail | | | | | | | | leaf [A. thaliana] | stroma ClpS stroma | clpS |
| 1985 | Detail | | | | | | | | leaf [A. thaliana] | plastid | wild-type |
| 2112 | Detail | | | | | | | | leaf [A. thaliana] | Stroma stroma | wt |
| 2114 | Detail | | | | | | | | leaf [A. thaliana] | Stroma stroma | wt |
| 2312 | Detail | | | | | | | | leaf [A. thaliana] | thylakoids thylakoid membrane | |
| 2314 | Detail | | | | | | | | leaf [A. thaliana] | thylakoids thylakoid membrane | |
| 2316 | Detail | | | | | | | | leaf [A. thaliana] | PG plastoglobule | |
| 2318 | Detail | | | | | | | | leaf [A. thaliana] | PG plastoglobule | |
| 2324 | Detail | | | | | | | | leaf [A. thaliana] | THYLAKOIDS thylakoid membrane | |
* For details about the exprimental sources
click here.
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Published Proteomics Data
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18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
19888209(leaves)
19114538(guard cells Arabidopsis leaf)
19423572(stroma chloroplast (wt and clpr2-1))
21693672(wound-regulated leaf proteome (AOS mutant))
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Comparative Proteomics Data
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| Expr* | Source | Tech. | Spot | PepSeq | ChargeState(z) | AreaRatio | Ambiguity | Tissue | Sample from |
| 180_181 | clpr2-1 cICAT - exp1 / wt cICAT - exp1 | cICAT | 5 | K.INLDSILDYCYNR.G + ICAT_l / K.INLDSILDYCYNR.G + ICAT_h | 2 | 0.97 | | leaf [A. thaliana] | chloroplast stroma |
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