PPDB

 The Plant Proteome Database

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AT4G20800.1   FAD-binding Berberine family protein
Lab Annot.
Mapman: 26.8 misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G26420.1 11Arabidopsis thaliana053070830 (0)S
AT1G26390.1 11Arabidopsis thaliana051473840 (0)S
AT1G26380.1 11Arabidopsis thaliana052669826 (1)S
Os06g35650.1 7Oryza sativa9E-13150442610 (0)S
Os06g35560.1 7Oryza sativa3E-12851142590 (0)S
Os06g35550.1 7Oryza sativa5E-12853044620 (0)M
GRMZM2G031941_P01 3.21Zea mays5E-14450944630 (0)S
Zm00001eb384940_P001 agpv5Zea mays5E-14450944630 (0)S
v1_GRMZM2G031941_P01 4a53Zea mays5E-14450944630 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: BBE(1) FAD_binding_4(1)
TargetP: Secreted (Class 2 C0.089; M0.058; S0.721; _0.091)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 528 aa (-cTP 435)
Molecular Weight 58.85 kDA(-cTP )
PI 9.13(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 18436743(specific to siliques)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help