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AT4G20440.1
small nuclear ribonucleoprotein associated protein B
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| Lab Annot. |
LSM domain proteins
Mapman: 27.1 RNA.processing |
| Curated Location |
nucleus (Pubmed: 15133128 )
TAIR curated location: nucleoplasm & Cajal body15133128 |
| Species |
Arabidopsis thaliana
Source:
TAIR Arabidopsis (v.11) |
| Links |
TAIR PeptideAtlas POGS SUBA Uniprot PTM
Get sequence
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Related Genes
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#Spots: The number of publicly accessible spots are in parenthesis
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| Prediction |
| PFAM: |
LSM(1) |
| TargetP: |
Mitochondria (Class 5 C0.024; M0.401; S0.099; _0.221) |
| Predotar: |
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| Subcel. Location: |
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| TM-HMM prediction: |
No |
| Aramemnon: |
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| TAT position: |
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| Length |
257 aa (-cTP 239) |
| Molecular Weight |
27.14 kDA(-cTP ) |
| PI |
11.17(-cTP ) |
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Experimental Evidence
Expand
View Identified Peptides
View GeneModel
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| Expr* | Spot | MW native | MW denatured | pI native | pI denatured | Type | Mowse | Ambiguity | Tissue | Sample from | Genotype |
| 371 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | clpr4-1 |
| 528 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | wild-type (wt2) |
| 1404 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.14 -rep. 1 | wild-type |
| 1417 | Detail | | | | | | | | leaf [A. thaliana] | total tissue (2% sucrose) | clpr4-1 (rep. 2) |
| 1418 | Detail | | | | | | | | leaf [A. thaliana] | total tissue (2% sucrose) | clpr4-1 (rep. 3) |
| 1431 | Detail | | | | | | | | leaf [A. thaliana] | total tissue (2% sucrose) | wild-type (rep. 2) |
| 2018 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | prep1-1xprep2-1 |
| 2043 | Detail | | | | | | | | Total leaf [A. thaliana] | total soluble | wt and prep1-1xprep2-1xoop |
| 2044 | Detail | | | | | | | | Total leaf [A. thaliana] | total soluble | wt and prep1-1xprep2-1xoop |
| 2045 | Detail | | | | | | | | Total leaf [A. thaliana] | total soluble | wt and prep1-1xprep2-1xoop |
| 2046 | Detail | | | | | | | | Total leaf [A. thaliana] | total soluble | wt and prep1-1xprep2-1xoop |
| 2047 | Detail | | | | | | | | Total leaf [A. thaliana] | total soluble | wt and prep1-1xprep2-1xoop |
| 2048 | Detail | | | | | | | | Total leaf [A. thaliana] | total soluble | wt and prep1-1xprep2-1xoop |
| 2049 | Detail | | | | | | | | Total leaf [A. thaliana] | total soluble | wt and prep1-1xprep2-1xoop |
| 2050 | Detail | | | | | | | | Total leaf [A. thaliana] | total soluble | wt and prep1-1xprep2-1xoop |
| 2052 | Detail | | | | | | | | Total leaf [A. thaliana] | total soluble | wt and prep1-1xprep2-1xoop |
| 2053 | Detail | | | | | | | | Total leaf [A. thaliana] | total soluble | wt and prep1-1xprep2-1xoop |
| 2182 | Detail | | | | | | | | Rosettes [A. thaliana] | total soluble | tic40 and wt |
| 2183 | Detail | | | | | | | | Rosettes [A. thaliana] | total soluble | tic40 and wt |
| 2247 | Detail | | | | | | | | seedlings [A. thaliana] | total tissue | atg5 |
| 2248 | Detail | | | | | | | | seedlings [A. thaliana] | total tissue | wild-type |
| 2253 | Detail | | | | | | | | seedlings [A. thaliana] | total tissue | atg5 |
| 2254 | Detail | | | | | | | | leaf [A. thaliana] | total seedlings | gfs9 |
| 2255 | Detail | | | | | | | | leaf [A. thaliana] | total seedlings | gfs9 |
| 2256 | Detail | | | | | | | | leaf [A. thaliana] | total seedlings | gfs9 |
| 2257 | Detail | | | | | | | | leaf [A. thaliana] | total seedlings | gfs9 |
| 2258 | Detail | | | | | | | | leaf [A. thaliana] | total seedlings | gfs9 |
| 2259 | Detail | | | | | | | | leaf [A. thaliana] | total seedlings | gfs9 |
* For details about the exprimental sources
click here.
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Published Proteomics Data
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19525416(leaf (wt and clpr4-1 mutant))
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
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Comparative Proteomics Data
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