PPDB

 The Plant Proteome Database

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AT4G20130.1   plastid transcriptionally active 14
Lab Annot. PTAC14 - contains SET domain
Mapman: 28.3* DNA.plastid nucleoid interacting
Curated Location plastid nucleoid (Pubmed: 23198870 16326926 22010110 )

TAIR curated location: plastid chromosome16326926
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G20130.2 11Arabidopsis thaliana03641001000 (0)_
AT4G20130.3 11Arabidopsis thaliana03641001000 (0)_
AT1G14030.1 11Arabidopsis thaliana2E-134302442126 (49)C
Os05g50980.1 7Oryza sativa0427587421 (21)C
Os02g50100.1 7Oryza sativa3E-13421244116 (16)C
Os09g24530.1 7Oryza sativa4E-09345234012 (12)C
Zm00001eb345040_P003 agpv5Zea mays043462790 (0)C
GRMZM5G807767_P03 3.21Zea mays0434627985 (69)C
Zm00001eb345040_P004 agpv5Zea mays2E-17536862790 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF4404(1) Rubis-subs-bind(2) SET(1)
TargetP: Chloroplast (Class 1 C0.945; M0.046; S0.029; _0.068)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 483 aa (-cTP 421)
Molecular Weight 55.61 kDA(-cTP 48.78)
PI 5.40(-cTP 5.09)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1175Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1176Detail       leaf [A. thaliana] co-IP ClpR2 stromawild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1196Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1197Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1214Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1215Detail       leaf [A. thaliana] co-IP ClpR2 stromawild-type
1292Detail       leaf [A. thaliana] co-IP cGEP (rep. 1) stromawild-type
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1526Detail       leaf [A. thaliana] co-IP GST-ClpS 100ug bait stromaclpc1 x clps (rep. 2)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1634Detail       leaf [A. thaliana] Stroma stromawild-type
1635Detail       leaf [A. thaliana] Stroma stromaclpt1-2
1636Detail       leaf [A. thaliana] Stroma stromaclpt1-2
1637Detail       leaf [A. thaliana] total leaf tissue stromaWild-type
1638Detail       leaf [A. thaliana] total leaf tissue stromaWild-type
1639Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1640Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
2085Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2291Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 15028209(Total chloroplast)
16326926(nucleoids)
19525416(leaf (wt and clpr4-1 mutant))
20340159(chloroplast heparin-binding proteins)
19995723(chloroplast reference proteome)

Comparative Proteomics Data

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