PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G19830.1   FKBP-like peptidyl-prolyl cis-trans isomerase family protein

Lab Annot. Isomerase
Mapman: 29.6 protein.folding
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G26555.1 11Arabidopsis thaliana6E-15137335162 (48)C
AT4G26555.2 11Arabidopsis thaliana1E-1413733510 (0)S
AT5G13410.1 11Arabidopsis thaliana2E-141543250233 (162)C
Os02g07220.1 7Oryza sativa2E-8614580900 (0)C
Os07g04160.2 7Oryza sativa3E-15228274225 (25)M
Os07g04160.1 7Oryza sativa3E-15228274225 (25)M
Zm00001eb207360_P001 agpv5Zea mays6E-8814778900 (0)C
GRMZM2G041060_P01 3.21Zea mays6E-8814778903 (0)C
v1_GRMZM2G041060_P03 4a53Zea mays7E-8414778900 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: FKBP_C(1)
TargetP: Chloroplast (Class 3 C0.761; M0.191; S0.002; _0.009)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon: 1 TMs
TAT position: 52
Length 229 aa (-cTP 166) (-lTP 151)
Molecular Weight 24.71 kDA(-cTP 18.21)(-lTP 16.73)
PI 9.34(-cTP 6.28)(-lTP 6.288)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
420Detail       leaf [A. thaliana] chloroplast stromaclpR1-stop (EMS)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1948Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2311Detail       leaf [A. thaliana] PG plastoglobule 
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help