PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G19490.1   VPS54

Lab Annot. VPS54
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G19490.2 11Arabidopsis thaliana010341001005 (2)C
Os04g13470.1 7Oryza sativa0989527021 (21)C
Zm00001eb419780_P001 agpv5Zea mays098653710 (0)C
Zm00001eb088370_P001 agpv5Zea mays099951690 (0)C
v1_GRMZM2G137984_P01 4a53Zea mays095951694 (4)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Chloroa_b-bind(1) Vps54(1) Vps54_N(2)
TargetP: Chloroplast (Class 1 C0.912; M0.095; S0.003; _0.093)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1034 aa (-cTP 947)
Molecular Weight 113.86 kDA(-cTP 104.91)
PI 5.84(-cTP 5.79)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
19546170(mature pollen grains)
19995723(chloroplast reference proteome)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help