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AT4G19170.1 nine-cis-epoxycarotenoid dioxygenase 4

Lab Annot.

carotenoid cleavage dioxygenase (CCD4)
Mapman: 16.1.4 secondary metabolism.isoprenoids.carotenoids

Curated Location

plastoglobules (Pubmed: 23198870 16461379 16414959 18431481 ) (supported by in-house exprements)

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G30100.1 11 Arabidopsis thaliana 1E-125 495 42 60 0 (0) C
AT4G18350.1 11 Arabidopsis thaliana 3E-117 501 39 59 0 (0) _
AT3G63520.1 11 Arabidopsis thaliana 2E-116 548 38 54 188 (143) _
Os02g47510.1 7 Oryza sativa 0 524 65 79 8 (8) C
Os12g24800.1 7 Oryza sativa 0 569 52 67 0 (0) C
Os07g05940.1 7 Oryza sativa 3E-125 549 40 57 1 (1) C
v1_GRMZM2G150363_P01 4a53 Zea mays 0 524 64 79 5 (5) _
GRMZM2G150363_P01 3.21 Zea mays 0 524 64 79 19 (3) _
Zm00001eb251990_P001 agpv5 Zea mays 0 524 64 79 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	RPE65(1)
TargetP:	Chloroplast (Class 2 C0.914; M0.121; S0.026; _0.010)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	595 aa (-cTP 561)
Molecular Weight	65.60 kDA(-cTP 61.81)
PI	6.42(-cTP 6.08)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
218	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type
219	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type
220	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type
224	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type
225	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type
226	Detail								leaf [A. thaliana]	chloroplast plastoglobule	clpr2-1
235	Detail								leaf [A. thaliana]	plastid plastoglobule	wild-type
303	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
326	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
327	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
339	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
342	Detail								leaf [A. thaliana]	chloroplast low density membrane	wild-type
343	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
351	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
352	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
371	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
484	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
528	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt2)
617	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
618	Detail								leaf [A. thaliana]	chloroplast stroma	clpr2-1
621	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
655	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k2k3
666	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type (rep. 1-1)
667	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type (rep. 2-1)
668	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type (rep. 3-1)
669	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k2 (rep. 1-1)
670	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k2 (rep. 2-1)
671	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k2 (rep. 3-1)
682	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k3 (rep. 2-1)
686	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k2 (rep. 1-2)
687	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k2 (rep. 2-2)
688	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k2 (rep. 3-2)
689	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k3 (rep. 1-2)
692	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type (rep. 1-2)
693	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type (rep. 2-2)
694	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type (rep. 3-2)
771	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type (rep. 1 - 5ug)
773	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type (rep. 2 - 5 ug)
774	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type (rep. 2- 10 ug)
775	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type (rep. 3 - 5 ug)
776	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type (rep. 3 - 10 ug)
869	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
870	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
871	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
872	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type (1-8); k2k3 (9-10)
873	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
874	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
875	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
876	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
877	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1122	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type
1123	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type
1124	Detail								leaf [A. thaliana]	chloroplast plastoglobule	wild-type
1125	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k2k3
1126	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k2k3
1127	Detail								leaf [A. thaliana]	chloroplast plastoglobule	k2k3
1260	Detail								leaf [A. thaliana]	co-IP SHOOT1 (rep. 1) thylakoid membrane	wild-type
1262	Detail								leaf [A. thaliana]	co-IP SHOOT1 (rep. 2) thylakoid membrane	wild-type
1345	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 1)
1346	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 2)
1347	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 3)
1350	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 3)
1372	Detail								Total leaf 5d ML stress [A. thaliana]	chloroplast plastoglobule	wild-type
1392	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1393	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1394	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1395	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1396	Detail								leaf [A. thaliana]	total leaf tissue	clpt1xclpt2 (rep. 2)
1397	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 3)
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1400	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1403	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1404	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1405	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1408	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1409	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	wild-type
1410	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.2	wild-type
1411	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	clpr2-1
1412	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.2	clpr2-1
1421	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1422	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1423	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 3)
1424	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 1)
1425	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 2)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1432	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1439	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 1)
1440	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 2)
1441	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 3)
1442	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 1)
1443	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 2)
1444	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
1445	Detail								leaf [A. thaliana]	total tissue (3 day HL)	wild-type (rep. 1)
1446	Detail								leaf [A. thaliana]	total tissue (3 day HL)	wild-type (rep. 2)
1447	Detail								leaf [A. thaliana]	total tissue (3 day HL)	wild-type (rep. 3)
1450	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
1457	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 3)
1460	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 3)
1461	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 1)
1462	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 2)
1481	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 1)
1483	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 2)
1484	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 2)
1485	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 3)
1486	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 3)
1494	Detail								leaf [A. thaliana]
1513	Detail								leaf [A. thaliana]		wild-type
1514	Detail								leaf [A. thaliana]		wild-type
1515	Detail								leaf [A. thaliana]		wild-type
1516	Detail								leaf [A. thaliana]		wild-type
1517	Detail								leaf [A. thaliana]		wild-type
1518	Detail								leaf [A. thaliana]		wild-type
1519	Detail								leaf [A. thaliana]		wild-type
1520	Detail								leaf [A. thaliana]		wild-type
1521	Detail								leaf [A. thaliana]		wild-type
1522	Detail								leaf [A. thaliana]		wild-type
1523	Detail								leaf [A. thaliana]		wild-type
1524	Detail								leaf [A. thaliana]		wild-type
1529	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	wild-type (rep. 1)
1531	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	wild-type (rep. 1)
1532	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	clps (rep. 1)
1540	Detail								leaf [A. thaliana]	Thylakoids plastoglobule	wild-type
1541	Detail								leaf [A. thaliana]	Thylakoids plastoglobule	M-48
1542	Detail								leaf [A. thaliana]		wild-type
1545	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1557	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1596	Detail								[A. thaliana]
1597	Detail								[A. thaliana]
1619	Detail								[A. thaliana]		m48
1620	Detail								[A. thaliana]		m48
1622	Detail								[A. thaliana]		m48
1625	Detail								Rosettes [A. thaliana]		Wild-type
1627	Detail								Rosettes [A. thaliana]	total leaf tissue thylakoid + envelope	Wild-type
1650	Detail								leaf [A. thaliana]	plastoglobules plastoglobule	m48
1651	Detail								leaf [A. thaliana]	plastoglobules plastoglobule	wild-type
1675	Detail								Rosettes [A. thaliana]
1676	Detail								Rosettes [A. thaliana]
1744	Detail								[A. thaliana]		Mep-6
1745	Detail								[A. thaliana]		Col-0
1765	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Col-0
1766	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1
1828	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Col-0 Fluctuating light
1830	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Col-0 Normal light
1832	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Col-0 Normal light
1833	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1
1933	Detail								leaf [A. thaliana]	chloroplast	wild-type
1934	Detail								leaf [A. thaliana]	chloroplast	wild-type
1935	Detail								leaf [A. thaliana]	chloroplast	wild-type
1936	Detail								leaf [A. thaliana]	chloroplast	Prep1_Prep2
1941	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1942	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1943	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1944	Detail								leaf [A. thaliana]	stroma UVR stroma	UVR
1945	Detail								leaf [A. thaliana]	stroma UVR stroma	UVR
1946	Detail								leaf [A. thaliana]	stroma UVR stroma	wild-type
1947	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1948	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1949	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1983	Detail								leaf [A. thaliana]	plastid	wild-type
1984	Detail								leaf [A. thaliana]	plastid	wild-type
1985	Detail								leaf [A. thaliana]	plastid	wild-type
1986	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2
1987	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2
1988	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2
2000	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2001	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2002	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2004	Detail								leaf [A. thaliana]	WT PG plastoglobule	WT
2005	Detail								leaf [A. thaliana]	RNAi PG plastoglobule	RNAi
2007	Detail								leaf [A. thaliana]	WT PG plastoglobule	WT
2008	Detail								leaf [A. thaliana]	RNAi PG plastoglobule	RNAi
2009	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2010	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2015	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2017	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2018	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2019	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2020	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2028	Detail								leaf [A. thaliana]	WT PG plastoglobule	WT
2029	Detail								leaf [A. thaliana]	over expressed M48 plastoglobule	M48
2030	Detail								leaf [A. thaliana]	over expressed M48 plastoglobule	M48
2112	Detail								leaf [A. thaliana]	Stroma stroma	wt
2113	Detail								leaf [A. thaliana]	Stroma stroma	wt
2114	Detail								leaf [A. thaliana]	Stroma stroma	wt
2115	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2116	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2117	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2182	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2183	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2286	Detail								[A. thaliana]		Clp C1 WT
2287	Detail								[A. thaliana]		Clp C1 WT
2288	Detail								[A. thaliana]		Clp C1 WT
2289	Detail								[A. thaliana]		Clp C1 TRAP
2290	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT
2298	Detail								[A. thaliana]		Clp C1 WT
2299	Detail								[A. thaliana]		Clp C1 TRAP
2300	Detail								[A. thaliana]		Clp C1 TRAP
2301	Detail								[A. thaliana]		Clp C1 TRAP
2302	Detail								[A. thaliana]		Clp C1 WT
2303	Detail								[A. thaliana]		Clp C1 WT
2304	Detail								[A. thaliana]		Clp C1 WT
2305	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP
2308	Detail								leaf [A. thaliana]	PG plastoglobule
2309	Detail								leaf [A. thaliana]	PG plastoglobule
2311	Detail								leaf [A. thaliana]	PG plastoglobule
2312	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane
2313	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane
2314	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane
2316	Detail								leaf [A. thaliana]	PG plastoglobule
2317	Detail								leaf [A. thaliana]	PG plastoglobule
2318	Detail								leaf [A. thaliana]	PG plastoglobule
2319	Detail								leaf [A. thaliana]	PG plastoglobule
2320	Detail								[A. thaliana]	Thylakoids plastoglobule
2321	Detail								leaf [A. thaliana]
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
16414959(plastoglubular)
16461379(plastoglubular)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
19995723(chloroplast reference proteome)
21311031(chloroplasts)

Comparative Proteomics Data