PPDB

The Plant Proteome Database

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AT4G19010.1   AMP-dependent synthetase and ligase family protein

Lab Annot. At4CL7 - 4-coumarate--CoA ligase (Clade V)
Mapman: 16.2 secondary metabolism.phenylpropanoids
Curated Location peroxisome (Pubmed: 24838974 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G20510.1 11Arabidopsis thaliana3E-152540426662 (16)C
AT1G20480.1 11Arabidopsis thaliana1E-14954942640 (0)_
AT1G20500.1 11Arabidopsis thaliana1E-14854640630 (0)C
Os08g04770.1 7Oryza sativa055753680 (0)C
Os10g42800.1 7Oryza sativa3E-18051053690 (0)_
Os03g04000.1 7Oryza sativa7E-15354742657 (7)_
v1_GRMZM2G433624_P01 4a53Zea mays054254700 (0)_
GRMZM2G433624_P01 3.21Zea mays054254700 (0)_
Zm00001eb025180_P003 agpv5Zea mays054254700 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: AMP-binding(1) AMP-binding_C(1)
TargetP: Chloroplast (Class 3 C0.668; M0.132; S0.025; _0.265)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon: 2 TMs
TAT position:
Length 566 aa (-cTP 520)
Molecular Weight 61.96 kDA(-cTP 56.81)
PI 8.14(-cTP 7.28)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
105Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
106Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
122Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
224Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help