AT4G18930.1
RNA ligase/cyclic nucleotide phosphodiesterase family protein
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Lab Annot. |
cyclic phosphodiesterase, identical to cyclic phosphodiesterase Mapman: 35.1 not assigned.no ontology |
Curated Location |
TAIR curated location: cytoplasm9148938 |
Species |
Arabidopsis thaliana
Source:
TAIR Arabidopsis (v.11) |
Links |
TAIR PeptideAtlas POGS SUBA Uniprot PTM
Get sequence
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Related Genes
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#Spots: The number of publicly accessible spots are in parenthesis
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Prediction |
PFAM: |
2_5_RNA_ligase2(2) CLZ(1) CPDase(1) LigT_PEase(2) |
TargetP: |
Cytoplasm (Class 2 C0.083; M0.116; S0.097; _0.873) |
Predotar: |
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Subcel. Location: |
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TM-HMM prediction: |
No |
Aramemnon: |
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TAT position: |
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Length |
181 aa (-cTP 85) |
Molecular Weight |
20.51 kDA(-cTP ) |
PI |
4.91(-cTP ) |
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Experimental Evidence
Expand
View Identified Peptides
View GeneModel
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Expr* | Spot | MW native | MW denatured | pI native | pI denatured | Type | Mowse | Ambiguity | Tissue | Sample from | Genotype |
351 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 | wild-type |
352 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 | wild-type |
361 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 | wild-type |
371 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | clpr4-1 |
527 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | wild-type (wt1) |
528 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | wild-type (wt2) |
621 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | clpr4-1 |
622 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | wild-type |
1347 | Detail | | | | | | | | leaf [A. thaliana] | total tissue (5 day HL) | wild-type (rep. 3) |
1348 | Detail | | | | | | | | leaf [A. thaliana] | total tissue (5 day HL) | abck2xabck3 (rep. 1) |
1349 | Detail | | | | | | | | leaf [A. thaliana] | total tissue (5 day HL) | abck2xabck3 (rep. 2) |
1407 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 rep 2. | clpr2-1 |
1409 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 rep 1.1 | wild-type |
1410 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 rep 1.2 | wild-type |
1411 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 rep 1.1 | clpr2-1 |
1412 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue 1.07 rep 1.2 | clpr2-1 |
1417 | Detail | | | | | | | | leaf [A. thaliana] | total tissue (2% sucrose) | clpr4-1 (rep. 2) |
1418 | Detail | | | | | | | | leaf [A. thaliana] | total tissue (2% sucrose) | clpr4-1 (rep. 3) |
1529 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue - 0 uM CAP | wild-type (rep. 1) |
1534 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue - 40 uM CAP | clps (rep. 1) |
2003 | Detail | | | | | | | | leaf [A. thaliana] | over expressed M48 plastoglobule | M48 |
2004 | Detail | | | | | | | | leaf [A. thaliana] | WT PG plastoglobule | WT |
2005 | Detail | | | | | | | | leaf [A. thaliana] | RNAi PG plastoglobule | RNAi |
2006 | Detail | | | | | | | | leaf [A. thaliana] | over expressed M48 plastoglobule | M48 |
2007 | Detail | | | | | | | | leaf [A. thaliana] | WT PG plastoglobule | WT |
2008 | Detail | | | | | | | | leaf [A. thaliana] | RNAi PG plastoglobule | RNAi |
2009 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | wild-type |
2010 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | prep1-1xprep2-1 |
2012 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | prep1-1xprep2-1xopda1-2 |
2013 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | wt |
2014 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | prep1-1xprep2-1 |
2015 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | opda1-2 |
2016 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | prep1-1xprep2-1xopda1-2 |
2017 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | wild-type |
2020 | Detail | | | | | | | | leaf [A. thaliana] | total leaf tissue | prep1-1xprep2-1xopda1-2 |
2029 | Detail | | | | | | | | leaf [A. thaliana] | over expressed M48 plastoglobule | M48 |
2030 | Detail | | | | | | | | leaf [A. thaliana] | over expressed M48 plastoglobule | M48 |
* For details about the exprimental sources
click here.
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Published Proteomics Data
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19546170(mature pollen grains) 19525416(leaf (wt and clpr4-1 mutant)) 21173025(root proteome) |
Comparative Proteomics Data
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