PPDB

 The Plant Proteome Database

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AT4G18370.1   DEGP protease 5
Lab Annot. DEG5 protease (No PDZ) (DEG5/DEG8 hexamer)
Mapman: 29.5.5.1.1* protein.degradation.serine protease.PA.S1
Curated Location thylakoid-peripheral-lumenal-side (Pubmed: 23198870 17449806 18431481 )

TAIR curated location: thylakoid lumen (sensu Viridiplantae)11826309,11719511
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G18370.2 11Arabidopsis thaliana02641001000 (0)C
AT4G18370.3 11Arabidopsis thaliana3E-1732351001000 (0)C
AT3G27925.1 11Arabidopsis thaliana4E-622794560856 (456)C
Os12g42210.1 7Oryza sativa1E-10824465787 (7)C
Os05g49380.2 7Oryza sativa2E-60240496325 (25)C
Os05g49380.1 7Oryza sativa2E-60240496325 (25)C
GRMZM2G118646_P01 3.21Zea mays3E-10424363764 (4)C
v1_GRMZM2G118646_P01 4a53Zea mays3E-10424363768 (8)C
Zm00001eb031870_P003 agpv5Zea mays3E-10424363760 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Peptidase_S29(1) Peptidase_S46(1) Trypsin(1) Trypsin_2(1)
TargetP: Chloroplast (Class 3 C0.879; M0.011; S0.352; _0.011)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position: 42
Length 323 aa (-cTP 295) (-lTP 250)
Molecular Weight 34.92 kDA(-cTP 31.91)(-lTP 27.06)
PI 5.20(-cTP 5.03)(-lTP 4.805)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
30Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
169Detail       leaf [A. thaliana] plastid thylakoid membranevtc2-2
326Detail       leaf [A. thaliana] chloroplast stromawild-type
339Detail       leaf [A. thaliana] chloroplast stromawild-type
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
622Detail       leaf [A. thaliana] total leaf tissue wild-type
873Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1513Detail       leaf [A. thaliana] wild-type
1517Detail       leaf [A. thaliana] wild-type
1518Detail       leaf [A. thaliana] wild-type
1519Detail       leaf [A. thaliana] wild-type
1520Detail       leaf [A. thaliana] wild-type
1521Detail       leaf [A. thaliana] wild-type
1523Detail       leaf [A. thaliana] wild-type
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1542Detail       leaf [A. thaliana] wild-type
1723Detail        [A. thaliana]  
1724Detail        [A. thaliana]  
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1870Detail       Total leaf [A. thaliana] Stroma wild-type
1934Detail       leaf [A. thaliana] chloroplast wild-type
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1944Detail       leaf [A. thaliana] stroma UVR stromaUVR
1945Detail       leaf [A. thaliana] stroma UVR stromaUVR
1946Detail       leaf [A. thaliana] stroma UVR stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1948Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1985Detail       leaf [A. thaliana] plastid wild-type
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2
2000Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2001Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2013Detail       leaf [A. thaliana] total leaf tissue wt
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2028Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2043Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2044Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2046Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2049Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2051Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2054Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2055Detail       Total leaf [A. thaliana] chloroplast stromawt and cgep
2067Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2069Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2073Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2077Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2084Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2085Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2141Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2142Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2144Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2145Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2146Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2149Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 15028209(Total chloroplast)
11719511(Thylakoid lumen proteome)
11826309(thylakoid peripheral&lumen)
16648217(thylakoids)
18431481(chloroplast)
19888209(80S polysomal fraction)
19995723(chloroplast reference proteome)
21311031(chloroplasts)

Comparative Proteomics Data

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