PPDB

PPDB	The Plant Proteome Database

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AT4G18180.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G07840.1 11 Arabidopsis thaliana 9E-103 385 41 60 1 (1) S
AT3G14040.1 11 Arabidopsis thaliana 3E-101 384 42 61 0 (0) S
AT3G07850.1 11 Arabidopsis thaliana 3E-100 384 41 61 0 (0) S
Os08g23790.1 7 Oryza sativa 4E-131 384 48 66 0 (0) S
Os06g40880.1 7 Oryza sativa 3E-101 404 41 58 0 (0) S
Os02g10300.1 7 Oryza sativa 9E-99 370 41 61 0 (0) S
v1_GRMZM2G452150_P01 4a53 Zea mays 3E-133 417 46 64 2 (0) S
GRMZM2G452150_P01 3.21 Zea mays 3E-133 417 46 64 2 (2) S
Zm00001eb028200_P002 agpv5 Zea mays 3E-133 417 46 64 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(1) Fungal_KA1(1) Glyco_hydro_28(1) Pectate_lyase_3(1)
TargetP:	Secreted (Class 2 C0.001; M0.013; S0.907; _0.208)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	422 aa (-cTP 355)
Molecular Weight	45.97 kDA(-cTP )
PI	9.27(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

18796151(cell wall (hypocotyl))
WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data