PPDB

 The Plant Proteome Database

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AT4G17740.1   Peptidase S41 family protein
Lab Annot. CTPA (D1 C-term processing)
Mapman: 29.5.5.8.2* protein.degradation.serine protease.SK.S41
Curated Location thylakoid-peripheral-lumenal-side (Pubmed: 23198870 18431481 )

TAIR curated location: thylakoid lumen (sensu Viridiplantae) & mitochondrion14671022,11719511
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G17740.2 11Arabidopsis thaliana0515989846 (23)C
AT3G57680.1 11Arabidopsis thaliana3E-7735539600 (0)C
AT3G57680.2 11Arabidopsis thaliana2E-6832140610 (0)_
Os02g57060.1 7Oryza sativa3E-12824473868 (8)M
Os06g21380.1 7Oryza sativa3E-7435838580 (0)C
Os01g47450.1 7Oryza sativa6E-5838634520 (0)M
Zm00001eb258790_P001 agpv5Zea mays041174860 (0)C
v1_GRMZM2G379002_P01 4a53Zea mays4E-15929573861 (1)_
GRMZM2G379002_P01 3.21Zea mays4E-159295738616 (4)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: PDZ(1) PDZ_2(1) PDZ_6(1) Peptidase_S41(1) Tricorn_C1(1) Tricorn_PDZ(2)
TargetP: Chloroplast (Class 3 C0.866; M0.009; S0.004; _0.394)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 515 aa (-cTP 430)
Molecular Weight 55.76 kDA(-cTP 46.27)
PI 8.97(-cTP 5.55)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
127Detail       leaf [A. thaliana] plastid thylakoid membranewild-type
172Detail       leaf [A. thaliana] plastid thylakoid membranewild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
1520Detail       leaf [A. thaliana] wild-type
1542Detail       leaf [A. thaliana] wild-type
1870Detail       Total leaf [A. thaliana] Stroma wild-type
1937Detail       leaf [A. thaliana] chloroplast Prep1_Prep2
2041Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2068Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2076Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2078Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2141Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2142Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2144Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2146Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2149Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2151Detail       Total leaf [A. thaliana] total soluble stromawt & cgep

* For details about the exprimental sources click here.

Published Proteomics Data

 11719511(Thylakoid lumen proteome)
MitoDB(Mitochondrial proteome)
16648217(thylakoids)
20423899(chloroplast)
19995723(chloroplast reference proteome)
22060019(phosphoproteome - N-starved seedlings)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help