PPDB

PPDB	The Plant Proteome Database

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AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot.

RNA-binding (RRM/RBD/RNP motifs) protein
Mapman: 27.4 RNA.RNA binding

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G46870.1 11 Arabidopsis thaliana 1E-143 285 78 89 0 (0) _
AT5G46870.2 11 Arabidopsis thaliana 1E-143 285 78 89 0 (0) _
AT5G16840.2 11 Arabidopsis thaliana 3E-95 233 62 77 47 (36) _
Os04g50790.1 7 Oryza sativa 7E-113 279 62 78 0 (0) _
Os04g50790.2 6 Oryza sativa 1E-111 279 62 79 0 (0) _
Os06g02240.1 7 Oryza sativa 4E-99 243 65 79 8 (8) _
Zm00001eb430040_P001 agpv5 Zea mays 1E-113 279 61 78 0 (0) _
GRMZM2G035719_P01 3.21 Zea mays 6E-111 277 60 76 0 (0) _
v1_GRMZM2G035719_P01 4a53 Zea mays 6E-111 277 60 76 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	RRM_1(1)
TargetP:	Cytoplasm (Class 2 C0.057; M0.117; S0.096; _0.769)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	313 aa (-cTP 306)
Molecular Weight	33.55 kDA(-cTP )
PI	5.85(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1494	Detail								leaf [A. thaliana]
1550	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k1k3
1557	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1569	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k1k3
1572	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	WT
1574	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k2k3
1576	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	K2K3
1582	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	K2K3
1745	Detail								[A. thaliana]		Col-0

* For details about the exprimental sources click here.

Published Proteomics Data

16807317(Phosphoproteins)
18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
17216043(leaf)
19253305(phosphoproteins (etiolated seedling))
19334764(plasma membrane (cell culture))
19376835(leaf phosphoproteins)
20706207(contaminants cell cycle interactome (cell culture))
22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data