PPDB

PPDB	The Plant Proteome Database

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AT4G17520.1 Hyaluronan / mRNA binding family

Lab Annot.

nuclear RNA-binding protein, putative
Mapman: 27.4 RNA.RNA binding

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G47210.1 11 Arabidopsis thaliana 2E-92 374 56 67 249 (157) _
AT5G47210.3 11 Arabidopsis thaliana 1E-77 301 58 69 141 (89) _
AT4G16830.1 11 Arabidopsis thaliana 3E-54 388 45 58 49 (24) _
Os01g41880.1 7 Oryza sativa 1E-44 293 45 58 3 (3) _
Os01g52390.1 7 Oryza sativa 3E-40 334 44 55 38 (38) _
Os05g51180.1 7 Oryza sativa 4E-40 371 40 48 3 (3) _
Zm00001eb154710_P001 agpv5 Zea mays 2E-43 334 43 55 0 (0) _
GRMZM2G055276_P01 3.21 Zea mays 2E-43 334 43 55 106 (83) _
v1_GRMZM2G055276_P01 4a53 Zea mays 2E-43 334 43 55 71 (69) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	HABP4_PAI-RBP1(2) Radical_SAM_N(1) Stm1_N(3)
TargetP:	Cytoplasm (Class 4 C0.519; M0.030; S0.026; _0.751)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	360 aa (-cTP 308)
Molecular Weight	38.91 kDA(-cTP )
PI	8.71(-cTP )

Experimental Evidence

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* For details about the exprimental sources click here.

Published Proteomics Data

15815986(Leaf)
17951448(peroxisome (leaves))
19200160(flower-stage 12)
19546170(mature pollen grains)
20118269(developing seeds)
17216043(leaf)
19888209(leaves)
21325567(root-proteome (wt & det3))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21841088(mitochondria (2DE native gel))
21173025(root proteome)

Comparative Proteomics Data