PPDB

The Plant Proteome Database

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AT4G17510.1   ubiquitin C-terminal hydrolase 3

Lab Annot. UCH3; ubiquitin thiolesterase; Ubiquitin carboxyl-terminal hydrolase (peptidase C12)
Mapman: 29.5.11.5 protein.degradation.ubiquitin.ubiquitin protease
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G65650.1 11Arabidopsis thaliana5E-14232294723 (17)_
AT5G16310.1 11Arabidopsis thaliana1E-1324027460 (0)_
Os02g43760.1 7Oryza sativa6E-102225617615 (15)_
Os04g46190.1 7Oryza sativa5E-9222357740 (0)_
Os04g46190.2 7Oryza sativa2E-7920756720 (0)_
Zm00001eb186330_P002 agpv5Zea mays2E-10122760770 (0)_
GRMZM2G145226_P01 3.21Zea mays2E-10122760775 (5)_
v1_GRMZM2G145226_P01 4a53Zea mays2E-10122760777 (7)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Peptidase_C12(1)
TargetP: Cytoplasm (Class 4 C0.389; M0.048; S0.204; _0.761)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 234 aa (-cTP 231)
Molecular Weight 25.71 kDA(-cTP )
PI 4.91(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
622Detail       leaf [A. thaliana] total leaf tissue wild-type
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
2250Detail       seedlings [A. thaliana] total tissue atg5
2252Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help