PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G16830.2   Hyaluronan / mRNA binding family
Lab Annot. nuclear RNA-binding protein (RGGA)
Mapman: 27.4 RNA.RNA binding
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G16830.1 11Arabidopsis thaliana5E-14921510010049 (24)_
AT4G16830.3 11Arabidopsis thaliana7E-14921510010011 (11)M
AT4G17520.1 11Arabidopsis thaliana6E-62237526648 (24)_
Os01g52390.1 7Oryza sativa8E-46224556738 (38)_
Os01g41880.1 7Oryza sativa2E-4422352643 (3)_
Os05g45660.2 7Oryza sativa6E-42237546412 (12)_
Zm00001eb154690_P001 agpv5Zea mays7E-4622755660 (0)_
v1_GRMZM2G116282_P02 4a53Zea mays7E-46227556674 (72)_
GRMZM2G116282_P02 3.21Zea mays7E-462275566102 (86)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: HABP4_PAI-RBP1(2) SelK_SelG(2) Smg8_Smg9(1) UTP15_C(2) V_ATPase_I(1)
TargetP: Secreted (Class 3 C0.102; M0.025; S0.758; _0.174)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 265 aa (-cTP 218)
Molecular Weight 28.68 kDA(-cTP )
PI 5.11(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
2246Detail       seedlings [A. thaliana] total tissue gfs9
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2257Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help