PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G16800.1   ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Lab Annot. enoyl-CoA hydratase
Mapman: 11.9.4.3 lipid metabolism.lipid degradation.beta-oxidation.enoyl CoA hydratase
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G43280.1 11Arabidopsis thaliana2E-2926129477 (4)_
AT1G60550.1 11Arabidopsis thaliana5E-26265284632 (12)_
AT4G16210.1 11Arabidopsis thaliana1E-23243305142 (31)_
Os02g43720.1 7Oryza sativa2E-12828862790 (0)M
Os02g43710.1 7Oryza sativa4E-12126564790 (0)M
Os01g70090.1 7Oryza sativa1E-31259305010 (10)_
Zm00001eb249250_P001 agpv5Zea mays1E-12627364800 (0)M
v1_GRMZM2G094655_P01 4a53Zea mays1E-12627364803 (3)M
GRMZM2G094655_P01 3.21Zea mays1E-12627364800 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ECH_1(1) ECH_2(2) HicB_lk_antitox(2) SDH_sah(1)
TargetP: Mitochondria (Class 1 C0.018; M0.907; S0.007; _0.083)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 301 aa (-cTP 257)
Molecular Weight 32.79 kDA(-cTP )
PI 8.15(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1875Detail       Total leaf [A. thaliana] total soluble wild-type
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2048Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2316Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
21311031(mitochondria)
21166475(cytosolic-fractions-crude)
21841088(mitochondria (2DE native gel))
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help