PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G16500.1   Cystatin/monellin superfamily protein

Lab Annot. Cysteine protease inhibitor (cystatin)
Mapman: 29.5.3.7.1* protein.degradation.cysteine protease.inhibitor. IH-i25
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G16500.2 11Arabidopsis thaliana1E-781171001000 (0)S
AT5G47550.1 11Arabidopsis thaliana4E-248750672 (0)S
AT2G40880.1 11Arabidopsis thaliana3E-147941675 (4)S
Os03g31510.1 7Oryza sativa2E-168739566 (6)S
Os03g11180.1 7Oryza sativa2E-158343630 (0)S
Os01g58890.2 7Oryza sativa2E-1491436013 (13)S
GRMZM2G359581_P01 3.21Zea mays1E-169841600 (0)_
v1_GRMZM2G401374_P01 4a53Zea mays6E-168643625 (4)S
GRMZM2G401374_P01 3.21Zea mays6E-168643626 (6)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Cystatin(1) PP1(1) SQAPI(1)
TargetP: Secreted (Class 1 C0.034; M0.036; S0.929; _0.081)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 117 aa (-cTP 101)
Molecular Weight 12.56 kDA(-cTP )
PI 9.16(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1202Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1351Detail       leaf [A. thaliana] total tissue t1-t2
1352Detail       leaf [A. thaliana] total tissue Prep1_Prep2
1496Detail       leaf [A. thaliana] Prep1_Prep2_t1_t2
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2296Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

15539469(vacuole)
15593128(Cell Wall proteome)
16618929(UNKNOWN-LOPIT-callus)
19546170(mature pollen grains)
18796151(cell wall (hypocotyl))
WallDB-E.Jamet(cell wall reference proteome)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
21109274(cellwall-glycoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help