PPDB

PPDB	The Plant Proteome Database

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AT4G16390.1 pentatricopeptide (PPR) repeat-containing protein

Lab Annot.

RNA-binding protein P67 (SVR7) (maize homolog is ATP4)
Mapman: 27.4 RNA.RNA binding

Curated Location

plastid stroma (Pubmed: 23198870 11034340 20935174 18431481 ) (supported by in-house exprements)

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G46580.1 11 Arabidopsis thaliana 7E-147 626 38 60 205 (133) C
AT2G31400.1 11 Arabidopsis thaliana 3E-43 555 25 45 0 (0) C
AT1G18900.4 11 Arabidopsis thaliana 1E-39 500 23 47 0 (0) M
Os03g11670.1 7 Oryza sativa 0 559 56 75 24 (24) C
Os03g63910.1 7 Oryza sativa 1E-123 623 34 56 47 (47) C
Os07g40120.1 7 Oryza sativa 5E-39 391 27 47 0 (0) C
v1_GRMZM2G128665_P01 4a53 Zea mays 0 693 49 67 24 (24) C
GRMZM2G128665_P01 3.21 Zea mays 0 693 49 67 45 (43) C
Zm00001eb008730_P001 agpv5 Zea mays 0 693 49 67 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AEP1(2) ATP13(3) BTAD(3) Coatomer_E(2) ECSIT(4) Exog_C(2) Mtf2(3) PPR(10) PPR_1(
TargetP:	Chloroplast (Class 2 C0.883; M0.026; S0.017; _0.150)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	702 aa (-cTP 649)
Molecular Weight	78.24 kDA(-cTP 72.26)
PI	5.87(-cTP 5.47)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
303	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
326	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
339	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
541	Detail								leaf [A. thaliana]	stroma (FPLC) >1 MDa stroma	wild-type
542	Detail								leaf [A. thaliana]	stroma (FPLC) >500 kDa (HMB)	wild-type
543	Detail								leaf [A. thaliana]	stroma (FPLC) >600 kDa (HMA)	wild-type
619	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
869	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
870	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
871	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
873	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
874	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1178	Detail								leaf [A. thaliana]	co-IP RH3 stroma	clpr2-1
1179	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	clpr2-1
1197	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	clpr2-1
1214	Detail								leaf [A. thaliana]	co-IP RH3 stroma	wild-type
1215	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	wild-type
1392	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1395	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1396	Detail								leaf [A. thaliana]	total leaf tissue	clpt1xclpt2 (rep. 2)
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1400	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1402	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1403	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1404	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1405	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1406	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1408	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1411	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	clpr2-1
1412	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.2	clpr2-1
1415	Detail								leaf [A. thaliana]	total leaf tissue 1.14 rep 1.1	clpr2-1
1416	Detail								leaf [A. thaliana]	total leaf tissue 1.14 rep 1.2	clpr2-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1421	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1424	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 1)
1425	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 2)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1432	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1456	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 2)
1458	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 1)
1459	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 2)
1460	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 3)
1461	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 1)
1462	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 2)
1463	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 3)
1481	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 1)
1482	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 1)
1483	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 2)
1484	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 2)
1485	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 3)
1486	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 3)
1529	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	wild-type (rep. 1)
1530	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	wild-type (rep. 1)
1531	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	wild-type (rep. 1)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1635	Detail								leaf [A. thaliana]	Stroma stroma	clpt1-2
1637	Detail								leaf [A. thaliana]	total leaf tissue stroma	Wild-type
1638	Detail								leaf [A. thaliana]	total leaf tissue stroma	Wild-type
1639	Detail								leaf [A. thaliana]	total leaf tissue stroma	clpt2-1
1640	Detail								leaf [A. thaliana]	total leaf tissue stroma	clpt2-1
1672	Detail								[A. thaliana]
1757	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag
1766	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1
1938	Detail								leaf [A. thaliana]	chloroplast	Prep1_Prep2
1941	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1942	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1944	Detail								leaf [A. thaliana]	stroma UVR stroma	UVR
1945	Detail								leaf [A. thaliana]	stroma UVR stroma	UVR
1946	Detail								leaf [A. thaliana]	stroma UVR stroma	wild-type
1947	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1948	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1949	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1984	Detail								leaf [A. thaliana]	plastid	wild-type
1987	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2
1988	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2
2000	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2002	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2009	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2010	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2015	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2017	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2018	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2019	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2020	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2112	Detail								leaf [A. thaliana]	Stroma stroma	wt
2113	Detail								leaf [A. thaliana]	Stroma stroma	wt
2114	Detail								leaf [A. thaliana]	Stroma stroma	wt
2115	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2116	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2191	Detail								[A. thaliana]	plastid stroma stroma	P3-trap-strepII 40
2286	Detail								[A. thaliana]		Clp C1 WT
2287	Detail								[A. thaliana]		Clp C1 WT
2289	Detail								[A. thaliana]		Clp C1 TRAP
2290	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT
2298	Detail								[A. thaliana]		Clp C1 WT
2299	Detail								[A. thaliana]		Clp C1 TRAP
2300	Detail								[A. thaliana]		Clp C1 TRAP
2301	Detail								[A. thaliana]		Clp C1 TRAP
2302	Detail								[A. thaliana]		Clp C1 WT
2303	Detail								[A. thaliana]		Clp C1 WT
2304	Detail								[A. thaliana]		Clp C1 WT
2305	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP
2316	Detail								leaf [A. thaliana]	PG plastoglobule
2320	Detail								[A. thaliana]	Thylakoids plastoglobule
2321	Detail								leaf [A. thaliana]
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6
2400	Detail								leaf-soluble [A. thaliana]	GFP-nano-trap	wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
20423899(chloroplast)
20706207(cell cycle interactome (cell culture))
19995723(chloroplast reference proteome)

Comparative Proteomics Data