PPDB

 The Plant Proteome Database

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AT4G16260.1   Glycosyl hydrolase superfamily protein
Lab Annot. glycosyl hydrolase family 17 protein
Mapman: 26.4 misc.beta 1,3 glucan hydrolases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G16260.2 11Arabidopsis thaliana03151001000 (0)C
AT3G57270.1 11Arabidopsis thaliana2E-11632954710 (0)S
AT3G57240.1 11Arabidopsis thaliana3E-1103165569100 (6)S
Os01g71820.1 7Oryza sativa3E-10431553692 (2)_
Os01g71810.1 7Oryza sativa2E-103315527018 (18)_
Os01g71830.1 7Oryza sativa1E-10231951690 (0)_
Zm00001eb141540_P001 agpv5Zea mays5E-10832253702 (2)S
GRMZM2G065585_P01 3.21Zea mays5E-10832253700 (0)S
v1_GRMZM2G065585_P01 4a53Zea mays5E-10832253706 (6)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Glyco_hydro_17(1)
TargetP: Secreted (Class 2 C0.038; M0.015; S0.782; _0.138)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 344 aa (-cTP 285)
Molecular Weight 37.71 kDA(-cTP )
PI 6.42(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1468Detail       leaf [A. thaliana] co-IP GST stroma clpc1 x clps (rep. 2)
1540Detail       leaf [A. thaliana] Thylakoids plastoglobulewild-type
1541Detail       leaf [A. thaliana] Thylakoids plastoglobuleM-48
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1612Detail       Natural Senescence leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2166Detail       leaf [A. thaliana] stroma Clp stromaP5 trap-strepII
2167Detail       leaf [A. thaliana] stroma Clp stromaP3 trap-strepII
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2399Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1WTSTREP
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 15593128(Cell Wall proteome)
17151019(vacuole - suspension cell)
17916636(root (NaCl stress))
20682788(root secretome)
18796151(cell wall (hypocotyl))
19525416(leaf (wt and clpr4-1 mutant))
WallDB-E.Jamet(cell wall reference proteome)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help