PPDB

The Plant Proteome Database

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AT4G15770.1   RNA binding protein

Lab Annot. RNA binding
Mapman: 29.2.2 protein.synthesis.misc ribososomal protein
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os07g47420.1 7Oryza sativa2E-8618762773 (3)_
v1_GRMZM2G468932_P01 4a53Zea mays9E-91187647918 (18)_
Zm00001eb257450_P001 agpv5Zea mays9E-9118764790 (0)_
GRMZM2G468932_P01 3.21Zea mays9E-9118764797 (7)_

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: PUA(1) UPF0113(1) UPF0113_N(1)
TargetP: Cytoplasm (Class 2 C0.117; M0.047; S0.103; _0.868)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 187 aa (-cTP 167)
Molecular Weight 20.61 kDA(-cTP )
PI 8.39(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help