PPDB

 The Plant Proteome Database

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AT4G15560.1   Deoxyxylulose-5-phosphate synthase
Lab Annot. 1-deoxy-D-xylulose 5-phosphate synthase (DXS1) - CLA1 (CLOROPLASTOS ALTERADOS 1)
Mapman: 16.1.1.1 secondary metabolism.isoprenoids.non-mevalonate pathway.DXS
Curated Location plastid stroma (Pubmed: 23198870 18236010 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G21500.3 11Arabidopsis thaliana071778850 (0)C
AT3G21500.2 11Arabidopsis thaliana067178841 (1)C
AT3G21500.1 11Arabidopsis thaliana067178841 (1)C
Os05g33840.1 7Oryza sativa0654869216 (16)C
Os07g09190.1 7Oryza sativa066174850 (0)C
Os06g05100.1 7Oryza sativa070754700 (0)C
GRMZM2G137151_P03 3.21Zea mays0430849145 (15)_
v1_GRMZM2G137151_P03 4a53Zea mays0430849116 (16)_
GRMZM2G137151_P02 3.21Zea mays0405849140 (11)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DXP_synthase_N(1) E1_dh(1) SeleniumBinding(2) TPP_enzyme_C(2) Transket_pyr(1) Tr
TargetP: Chloroplast (Class 1 C0.956; M0.020; S0.023; _0.106)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 717 aa (-cTP 659)
Molecular Weight 76.83 kDA(-cTP 70.73)
PI 7.04(-cTP 6.37)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1424Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 1)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1465Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 1)
1481Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1518Detail       leaf [A. thaliana] wild-type
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1749Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1757Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1758Detail       leaf [A. thaliana] total leaf tissue DXS_Flag+fosmidomycin
1759Detail       leaf [A. thaliana] total leaf tissue Col_0
1760Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1761Detail       leaf [A. thaliana] total leaf tissue DXS_Flag+fosmidomycin
1762Detail       leaf [A. thaliana] total leaf tissue DXS_Flag+fosmidomycin
1763Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1931Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1932Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1948Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1949Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2289Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2298Detail        [A. thaliana] Clp C1 WT
2302Detail        [A. thaliana] Clp C1 WT
2303Detail        [A. thaliana] Clp C1 WT
2305Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
17216043(leaf)
19334764(plasma membrane (cell culture))
19376835(leaf phosphoproteins)
19995723(chloroplast reference proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

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