PPDB

The Plant Proteome Database

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AT4G15180.1   SET domain protein 2

Lab Annot. SET domain-containing protein, contains Pfam profile PF00856: SET domain
Mapman: 27.3.69 RNA.regulation of transcription.SET-domain transcriptional regulator family
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G77300.1 11Arabidopsis thaliana2E-1015530491 (1)_
AT1G77300.2 11Arabidopsis thaliana2E-1015530481 (1)_
AT5G42400.1 11Arabidopsis thaliana5E-1013435510 (0)_
Os08g08210.1 7Oryza sativa094861750 (0)_
Os02g34850.1 7Oryza sativa4E-1215431480 (0)C
Os12g41900.1 7Oryza sativa1E-1117034480 (0)_
GRMZM2G149153_P01 3.21Zea mays0185248640 (0)_
Zm00001eb413080_P002 agpv5Zea mays0183149660 (0)_
Zm00001eb413080_P003 agpv5Zea mays0183149650 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: GYF(2) GYF_2(2) SET(3)
TargetP: Cytoplasm (Class 2 C0.109; M0.083; S0.053; _0.725)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 2335 aa (-cTP 2276)
Molecular Weight 267.06 kDA(-cTP )
PI 6.44(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1202Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1208Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
1541Detail       leaf [A. thaliana] Thylakoids plastoglobuleM-48

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
22060019(phosphoproteome - N-starved seedlings)
21768351(Leaf-Phosphoproteome)
21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help