PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G14680.1   Pseudouridine synthase/archaeosine transglycosylase-like family protein
Lab Annot. ATPsulfurylase-3 (APS3)
Mapman: 14.1 S-assimilation.APS
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G14680.2 11Arabidopsis thaliana042898980 (0)C
AT3G22890.1 11Arabidopsis thaliana04668791559 (335)C
AT5G43780.1 11Arabidopsis thaliana04667887128 (116)C
Os03g53230.1 7Oryza sativa041877871 (1)C
Os04g02050.1 7Oryza sativa0345808821 (21)_
Os04g02050.2 7Oryza sativa0316798721 (21)_
Zm00001eb056910_P001 agpv5Zea mays042676850 (0)C
GRMZM2G149952_P01 3.21Zea mays0426768528 (15)C
v1_GRMZM2G149952_P01 4a53Zea mays0426768513 (13)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ATP-sulfurylase(1) PUA_2(1)
TargetP: Chloroplast (Class 1 C0.954; M0.025; S0.017; _0.123)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 465 aa (-cTP 416) (-lTP 326)
Molecular Weight 52.03 kDA(-cTP 46.69)(-lTP 36.59)
PI 6.89(-cTP 5.94)(-lTP 6.117)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
102Detail       petal [B. oleracea] plastid stromaAlboglabra
135Detail       leaf [A. thaliana] plastid thylakoid membranewild-type
311Detail       leaf [A. thaliana] total leaf tissue clpr2-1:R2-his6
326Detail       leaf [A. thaliana] chloroplast stromawild-type
873Detail       leaf [A. thaliana] chloroplast stromawild-type
1292Detail       leaf [A. thaliana] co-IP cGEP (rep. 1) stromawild-type
1294Detail       leaf [A. thaliana] co-IP cGEP (rep. 2) stromawild-type
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
1870Detail       Total leaf [A. thaliana] Stroma wild-type
1871Detail       Total leaf [A. thaliana] Stroma wild-type
1872Detail       Total leaf [A. thaliana] Stroma wild-type
1875Detail       Total leaf [A. thaliana] total soluble wild-type
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2077Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2144Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2167Detail       leaf [A. thaliana] stroma Clp stromaP3 trap-strepII
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2190Detail        [A. thaliana] plastid stroma stromaP3-strepII 31
2224Detail       leaf [A. thaliana] total leaf tissue Clp P3 strep
2287Detail        [A. thaliana] Clp C1 WT
2311Detail       leaf [A. thaliana] PG plastoglobule 
2316Detail       leaf [A. thaliana] PG plastoglobule 
2318Detail       leaf [A. thaliana] PG plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 17660356(tonoplast (Brassica oleracea buds))
19200160(flower-stage 12)
19114538(guard cells Arabidopsis leaf)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help