PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT4G14440.1   3-hydroxyacyl-CoA dehydratase 1

Lab Annot.
Mapman: 11.9.4.3 lipid metabolism.lipid degradation.beta-oxidation.enoyl CoA hydratase; 13.2.6.3 amino acid metabolism.degradation.aromatic aa.tryptophan
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G14430.1 11Arabidopsis thaliana2E-127240798953 (40)_
AT1G65520.1 11Arabidopsis thaliana6E-6522348670 (0)_
Os05g45300.1 7Oryza sativa2E-6423746640 (0)_
Os01g10830.1 7Oryza sativa6E-3822543630 (0)_
Os11g16960.1 7Oryza sativa4E-1623229470 (0)S
GRMZM2G101457_P01 3.21Zea mays2E-6923547669 (9)_
Zm00001eb293360_P001 agpv5Zea mays2E-6923547660 (0)_
v1_GRMZM2G101457_P01 4a53Zea mays2E-69235476627 (27)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ECH_1(1) ECH_2(1)
TargetP: Cytoplasm (Class 2 C0.084; M0.115; S0.085; _0.824)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 238 aa (-cTP 161)
Molecular Weight 25.60 kDA(-cTP )
PI 6.75(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2249Detail       seedlings [A. thaliana] total tissue gfs9
2251Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help