PPDB

 The Plant Proteome Database

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AT4G13670.1   plastid transcriptionally active 5
Lab Annot. PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5); weak J-domain
Mapman: 26.29* misc.DnaJ domain with unknown function
Curated Location plastid nucleoid (Pubmed: 23198870 16326926 )

TAIR curated location: thylakoid membrane (sensu Viridiplantae) & plastid chromosome15322131,16326926
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G13670.3 11Arabidopsis thaliana03431001000 (0)C
AT4G13670.4 11Arabidopsis thaliana026598990 (0)C
AT4G13670.2 11Arabidopsis thaliana026598990 (0)C
Os04g43420.1 7Oryza sativa8E-8921062796 (6)C
Zm00001eb426530_P001 agpv5Zea mays9E-8721361764 (4)C
GRMZM2G031721_P01 3.21Zea mays2E-862136176182 (153)C
Zm00001eb426530_P002 agpv5Zea mays2E-8621361764 (4)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DnaJ_CXXCXGXG(2) DUF3450(1) DUF460(1) DUF5351(3) PG_binding_1(1) PG_binding_2(1)
TargetP: Chloroplast (Class 2 C0.900; M0.216; S0.026; _0.016)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 387 aa (-cTP 347)
Molecular Weight 44.02 kDA(-cTP 39.72)
PI 4.84(-cTP 4.77)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
107Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
352Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1505Detail        [A. thaliana] wild-type
1506Detail        [A. thaliana]  
1507Detail        [A. thaliana] wild-type
1508Detail        [A. thaliana]  
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1535Detail       leaf [A. thaliana] wild-type
1566Detail       leaf [A. thaliana] TiO2 thylakoid membranek2k3
1568Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1569Detail       leaf [A. thaliana] TiO2 thylakoid membranek1k3
1572Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1581Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1582Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1641Detail       leaf [A. thaliana] total tissue shoot1 mutant
1643Detail       leaf [A. thaliana] total leaf tissue Wild-type
1676Detail       Rosettes [A. thaliana]  
1707Detail        [A. thaliana] sht1
1708Detail        [A. thaliana] Wild-type
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 15028209(Total chloroplast)
12938931(Total chloroplast envelope)
15322131(Thylakoid-stripped)
16326926(nucleoids)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
19888209(80S polysomal fraction)
19376835(leaf phosphoproteins)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21826108(SYP trans-Golgi-filtered)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help