PPDB

The Plant Proteome Database

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AT4G13590.1   Uncharacterized protein family (UPF0016)

Lab Annot. manganese transporter (PAM71-HL or CMT1)
Mapman: 34.12 transport.metal
Curated Location envelope-inner (Pubmed: 29734003 )

TAIR curated location: chloroplast inner membrane12775770
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G13590.2 11Arabidopsis thaliana035999993 (3)C
AT1G64150.1 11Arabidopsis thaliana3E-4721849642 (2)C
AT5G36290.2 11Arabidopsis thaliana6E-3722540590 (0)S
Os11g34180.1 7Oryza sativa4E-13734765740 (0)C
Os11g28300.1 7Oryza sativa1E-3820940610 (0)S
Os08g41670.1 7Oryza sativa4E-3621139590 (0)S
Zm00001eb088390_P004 agpv5Zea mays1E-12029868770 (0)M
Zm00001eb088390_P002 agpv5Zea mays1E-12029868770 (0)M
GRMZM2G097674_P01 3.21Zea mays1E-12029868772 (2)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: PetL(2) UPF0016(2)
TargetP: Chloroplast (Class 2 C0.738; M0.021; S0.081; _0.127)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 5 TMs
Aramemnon: 6 TMs
TAT position:
Length 359 aa (-cTP 293) (-lTP 220)
Molecular Weight 37.93 kDA(-cTP 30.47)(-lTP 23.28)
PI 8.82(-cTP 4.77)(-lTP 4.983)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

12766230(Total chloroplast envelope)
18431481(chloroplast)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help