PPDB

The Plant Proteome Database

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AT4G13220.1   transmembrane protein

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os12g17830.1 7Oryza sativa8E-42131517221 (21)C
Os12g17830.3 7Oryza sativa8E-42131517211 (11)C
Os12g17830.2 7Oryza sativa1E-258357805 (5)C
GRMZM5G867125_P02 3.21Zea mays5E-35117527066 (66)C
Zm00001eb317800_P001 agpv5Zea mays5E-3511752700 (0)C
Zm00001eb317800_P004 agpv5Zea mays3E-3310653730 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM:
TargetP: Chloroplast (Class 2 C0.840; M0.042; S0.001; _0.131)
Predotar:
Subcel. Location: Thylakoid membrane
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 176 aa (-cTP 113) (-lTP 65)
Molecular Weight 19.19 kDA(-cTP 12.23)(-lTP 7.26)
PI 10.17(-cTP 9.30)(-lTP 6.898)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

20061580(chloroplast envelope (inner+outer))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help