PPDB

 The Plant Proteome Database

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AT4G13180.1   NAD(P)-binding Rossmann-fold superfamily protein
Lab Annot. short-chain dehydrogenase/reductase (SDR) protein
Mapman: 26.22 misc.short chain dehydrogenase/reductase (SDR)
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G03980.1 11Arabidopsis thaliana8E-119263597967 (39)C
AT5G18210.1 11Arabidopsis thaliana2E-11325961770 (0)M
AT5G18210.2 11Arabidopsis thaliana2E-10224459770 (0)M
Os07g37420.1 7Oryza sativa5E-9425157724 (4)C
Os10g31780.1 7Oryza sativa3E-9324952690 (0)C
Os07g07450.1 7Oryza sativa6E-9025456702 (2)C
Zm00001eb192490_P001 agpv5Zea mays1E-10225557700 (0)_
Zm00001eb046870_P001 agpv5Zea mays1E-9325655720 (0)C
Zm00001eb046850_P001 agpv5Zea mays3E-8625353710 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: adh_short(1) adh_short_C2(1) Epimerase(1) GDP_Man_Dehyd(1) KR(1)
TargetP: Mitochondria (Class 5 C0.215; M0.372; S0.018; _0.136)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 263 aa (-cTP 242)
Molecular Weight 27.66 kDA(-cTP )
PI 6.33(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1907Detail       leaf [A. thaliana] total leaf tissue Col_0
1908Detail       leaf [A. thaliana] total leaf tissue clb19_myc
1909Detail       leaf [A. thaliana] total leaf tissue Col_0
1910Detail       leaf [A. thaliana] total leaf tissue clb19_myc
1911Detail       leaf [A. thaliana] total leaf tissue Col_0
1912Detail       leaf [A. thaliana] total leaf tissue clb19_myc
2246Detail       seedlings [A. thaliana] total tissue gfs9
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2268Detail       seedlings [A. thaliana] total tissue wild-type
2272Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help